miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 149 bits (75), Expect = 8e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 14 ctacatccaccctgtagatccgaatttgtttgaatttatattaataacaaattcggttct 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctacatccaccctgtagatccgaatttgtttgaatttatattaataacaaattcggttct 60
Query: 74 agagaggtttgtgtg 88
|||||||||||||||
Sbjct: 61 agagaggtttgtgtg 75
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 ctacatccaccctgtagatccgaatttgtttgaa 47
||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtttgaa 34
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 60 acaaattcggttctagagaggtttgtgtg 88
|||||||||||||||||||||||||||||
Sbjct: 48 acaaattcggttctagagaggtttgtgtg 76
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 60 acaaattcggttctagagaggtttgtgtg 88
|||||||||||||||||||||||||||||
Sbjct: 43 acaaattcggttctagagaggtttgtgtg 71
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acaaattcggttctagagaggtttgtgtgg 89
|||||||||||||||||||||||| |||||
Sbjct: 48 acaaattcggttctagagaggtttatgtgg 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 accctgtagatccgaatttgtt 43
||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtt 30
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 atccaccctgtagatccgaatttgt 42
|||||||||||||||||||||||||
Sbjct: 5 atccaccctgtagatccgaatttgt 29
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 50.1 bits (25), Expect = 6e-06
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 22 accctgtagatccgaatttgtttgaattta--tattaataacaaattcggttctagagag 79
||||||||||||||||||||||| | || | |||| ||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgttttatactagtttttaaggacaaattcggttctagagag 68
Query: 80 gttt 83
||||
Sbjct: 69 gttt 72
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 tacatccaccctgtagatccgaatttgt 42
|||||| |||||||||||||||||||||
Sbjct: 2 tacatcaaccctgtagatccgaatttgt 29
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 caccctgtagatccgaatttgt 42
||||||||||||||||||||||
Sbjct: 8 caccctgtagatccgaatttgt 29
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 caccctgtagatccgaatttgt 42
||||||||||||||||||||||
Sbjct: 8 caccctgtagatccgaatttgt 29
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 accctgtagatccgaatttgtttgaa 47
||||||||||||||||||||| ||||
Sbjct: 9 accctgtagatccgaatttgtgtgaa 34
