miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABKQ02014207.1/244697-244790 377270:Anopheles
          gambiae S
          Length = 94

 Score =  178 bits (90), Expect = 8e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggcaatatacgctctggcagtgtggttagctggttgtgtggttttcccatcttcacag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gaggcaatatacgctctggcagtgtggttagctggttgtgtggttttcccatcttcacag 60

                                        
Query: 61 ccactatccgccctgccgtcgcgctaatgc 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 ccactatccgccctgccgtcgcgctaatgc 90




>RF00711;mir-449;AAGE02012646.1/4275-4404 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 130

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  atacgctctggcagtgtggttagctggttgtgt 41
          ||||||| |||||||||||||||||||||||||
Sbjct: 8  atacgctatggcagtgtggttagctggttgtgt 40



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 54  ttcacagccactatccgccctgccgtcgcg 83
           |||||| |||||||||||||||||| ||||
Sbjct: 90  ttcacaaccactatccgccctgccgccgcg 119




>RF00711;mir-449;AAZO01004205.1/1293-1391 121224:Pediculus humanus
          corporis (human body louse)
          Length = 99

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 17 tggcagtgtggttagctggttgtgtggt 44
          ||||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgtggt 43




>RF00711;mir-449;AANI01014607.1/367710-367617 7244:Drosophila
          virilis
          Length = 94

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 cgctctggcagtgtggttagctggttgtgtgg 43
          |||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtgg 42




>RF00711;mir-449;AAPQ01006467.1/383882-383780 7220:Drosophila
          erecta
          Length = 103

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgctctggcagtgtggttagctggttgtgt 41
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAQB01008630.1/408110-408004 7260:Drosophila
          willistoni
          Length = 107

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgctctggcagtgtggttagctggttgtgt 41
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAFS01000411.1/37510-37407 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgctctggcagtgtggttagctggttgtgt 41
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAPP01019533.1/13885-13988 7217:Drosophila
          ananassae
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgctctggcagtgtggttagctggttgtgt 41
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AASS01031694.1/773-875 7240:Drosophila simulans
          Length = 103

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgctctggcagtgtggttagctggttgtgt 41
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
          (domestic silkworm)
          Length = 90

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tggcagtgtggttagctggttgtgt 41
          |||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAZX01003771.1/10900-10991 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 92

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tggcagtgtggttagctggttgtgt 41
          |||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAJJ01000475.1/25339-25252 7070:Tribolium
          castaneum (red flour beetle)
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tggcagtgtggttagctggttgtgt 41
          |||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40




>RF00711;mir-449;AAQA01000334.1/14819-14733 6279:Brugia malayi
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tggcagtgtggttagctggttgt 39
          |||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgt 38




>RF00711;mir-449;AADG05001988.1/87357-87449 7460:Apis mellifera
          (honey bee)
          Length = 93

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tggcagtgtggttagctggttgtgtgg 43
          ||||||||| |||||||||||||||||
Sbjct: 16 tggcagtgttgttagctggttgtgtgg 42