miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 10 ggacagtttcggtgagatatgtttgatattcttggttgttaagatttcaattatcaccca 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggacagtttcggtgagatatgtttgatattcttggttgttaagatttcaattatcaccca 60
Query: 70 ggaatcaaacatattattaccgtgactgtcg 100
|||||||||||||||||||||||||||||||
Sbjct: 61 ggaatcaaacatattattaccgtgactgtcg 91
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 109 bits (55), Expect = 7e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 19 cggtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaa 78
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 10 cggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaa 69
Query: 79 catattattac 89
|||||||||||
Sbjct: 70 catattattac 80
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 75.8 bits (38), Expect = 1e-13
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80
||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgtt-acattcaaaagttcacccaggaatcaaaca 70
Query: 81 tattattaccgtga 94
||||||||| ||||
Sbjct: 71 tattattactgtga 84
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80
|||||||||||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgt-atcattcaaaagttcacccaggaatcaaaca 70
Query: 81 tattattaccgtgac 95
||||||||| |||||
Sbjct: 71 tattattactgtgac 85
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgtta 50
||||||||||||||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgtta 41
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 22 tgagatatgtttgatattcttggttgtt 49
||||||||||||||||||||||||||||
Sbjct: 13 tgagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 56.0 bits (28), Expect = 9e-08
Identities = 63/74 (85%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 15 gtttcggtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaat 74
||||| || |||||||||||||||||||||||||| ||| || ||| ||||||||
Sbjct: 6 gtttccgtaagatatgtttgatattcttggttgtt---ttttaaagaatcgaccaggaat 62
Query: 75 caaacatattatta 88
||||||||||||||
Sbjct: 63 caaacatattatta 76
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gagatatgtttgatattcttggttgtt 49
|||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgtt 41
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 gagatatgtttgatattcttggttgt 48
||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgt 40
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ccaggaatcaaacatattattac 89
|||||||||||||||||||||||
Sbjct: 53 ccaggaatcaaacatattattac 75
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
