miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gaaattcattgcagctgctgaccactgcacaagattagaatgcgactcttgtgcgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaaattcattgcagctgctgaccactgcacaagattagaatgcgactcttgtgcgtgtga 62
Query: 61 caacggctattatgggtttt 80
||||||||||||||||||||
Sbjct: 63 caacggctattatgggtttt 82
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 6 tcattgcagctgctgaccactgcacaagattagaatgcgactcttgtgcgtgtgacaacg 65
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 8 tcattgcagctgctgaccactgcacaagattagattatgactcttgtgcgtgtgacaacg 67
Query: 66 gctattatggg 76
|||||| ||||
Sbjct: 68 gctattgtggg 78
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 tgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacggct 68
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 71
Query: 69 attatggg 76
|| |||||
Sbjct: 72 atgatggg 79
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 8 attgcagctgctgaccactgcacaagattagaat-gcgactcttgtgcgtgtgacaacgg 66
||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 69
Query: 67 ctatt 71
|||||
Sbjct: 70 ctatt 74
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 8 attgcagctgctgaccactgcacaagattaga---atgcgactcttgtgcgtgtgacaac 64
|||| |||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 10 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 69
Query: 65 ggctatt 71
|||||||
Sbjct: 70 ggctatt 76
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacaacggctattatgggt 77
|||||||||||||||||| |||||||| |||||
Sbjct: 51 actcttgtgcgtgtgacagcggctattgtgggt 83
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gcagctgctgaccactgcacaagattag 38
|||||||||| |||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattag 40
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacaacggctatt 71
|||||||||||||||||| ||||||||
Sbjct: 51 actcttgtgcgtgtgacagcggctatt 77
