miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
gambiae str. PEST
Length = 90
Score = 129 bits (65), Expect = 6e-30
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 ccctggtacatgtaatggcactggaagaattcacgggannnnnnncaacattcccgtgtt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 ccctggtacatgtaatggcactggaagaattcacgggatttttttcaacattcccgtgtt 62
Query: 61 ctcttagtggcatacctagtacaggg 86
||||||||||||||||||||||||||
Sbjct: 63 ctcttagtggcatacctagtacaggg 88
>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 gtacatgtaatggcactggaagaattcacggg 37
||||| ||||||||||||||||||||||||||
Sbjct: 8 gtacacgtaatggcactggaagaattcacggg 39
>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 gtacatgtaatggcactggaagaattcacggg 37
||||| ||||||||||||||||||||||||||
Sbjct: 8 gtacacgtaatggcactggaagaattcacggg 39
>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
pseudoobscura pseudoobscura
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taatggcactggaagaattcacggg 37
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
melanogaster (fruit fly)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taatggcactggaagaattcacggg 37
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
mojavensis
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taatggcactggaagaattcacggg 37
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aatggcactggaagaattcacggg 37
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
vitripennis (jewel wasp)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aatggcactggaagaattcacggg 37
||||||||||||||||||||||||
Sbjct: 17 aatggcactggaagaattcacggg 40
>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
(honey bee)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aatggcactggaagaattcacggg 37
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aatggcactggaagaattcacggg 37
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aatggcactggaagaattcacggg 37
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
