miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
gambiae M
Length = 91
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 ttcctatcagtgtaaatgggtgtgaatctagtgatttcacatgaattttcgattgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttcctatcagtgtaaatgggtgtgaatctagtgatttcacatgaattttcgattgtgact 62
Query: 61 agatccacactcattaatgttgtttggaa 89
|||||||||||||||||||||||||||||
Sbjct: 63 agatccacactcattaatgttgtttggaa 91
>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/66 (90%), Gaps = 6/66 (9%)
Strand = Plus / Plus
Query: 16 atgggtgtgaatctagtgatttcacatgaattttcgat----tgtgactagatccacact 71
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct: 18 atgggtgtgaatctagtg-tttcacatga-ttttcgatagcctgtgactagatccacact 75
Query: 72 cattaa 77
||||||
Sbjct: 76 cattaa 81
>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
(honey bee)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 attgtgactagatccacactcattaa 77
||||||||||||||||||||||||||
Sbjct: 49 attgtgactagatccacactcattaa 74
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 ttgtgactagatccacactcattaat 78
||||||||||||||||||||||||||
Sbjct: 59 ttgtgactagatccacactcattaat 84
>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
willistoni
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 ttgtgactagatccacactcattaat 78
||||||||||||||||||||||||||
Sbjct: 58 ttgtgactagatccacactcattaat 83
>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila
virilis
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 ttgtgactagatccacactcattaa 77
|||||||||||||||||||||||||
Sbjct: 60 ttgtgactagatccacactcattaa 84
>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
vitripennis (jewel wasp)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tgtgactagatccacactcattaa 77
||||||||||||||||||||||||
Sbjct: 51 tgtgactagatccacactcattaa 74
>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tgtgactagatccacactcattaa 77
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 gtgactagatccacactcattaa 77
|||||||||||||||||||||||
Sbjct: 55 gtgactagatccacactcattaa 77
