miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00732;mir-305;AAAB01008980.1/2241127-2241216 180454:Anopheles
gambiae str. PEST
Length = 90
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tttgtcacatgtctattgtacttcatcaggtgctctggtggatttgagaaaacccggcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgtcacatgtctattgtacttcatcaggtgctctggtggatttgagaaaacccggcac 60
Query: 61 atgttggagtacactctatgtgctgacaag 90
||||||||||||||||||||||||||||||
Sbjct: 61 atgttggagtacactctatgtgctgacaag 90
>RF00732;mir-305;AAGE02001651.1/105678-105765 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 3 tgtcacatgtctattgtacttcatcaggtgctctggtggatttgagaaaacccggcacat 62
||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 3 tgtcacatgtctattgtacttcatcaggtgctctggttgtttt--cgatacccggcacat 60
Query: 63 gttggagtacactctatgtgctgaca 88
||||||||||||| |||||||||||
Sbjct: 61 gttggagtacacttaatgtgctgaca 86
>RF00732;mir-305;AAJJ01000649.1/41392-41476 7070:Tribolium
castaneum (red flour beetle)
Length = 85
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 tgtcacatgtctattgtacttcatcaggtgctctggt 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgtcacatgtctattgtacttcatcaggtgctctggt 39
>RF00732;mir-305;AANI01016257.1/59422-59335 7244:Drosophila
virilis
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/70 (90%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 8 catgtctattgtacttcatcaggtgctctggtg-gatttgagaaaacccggcacatgttg 66
||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 8 catgtctattgtacttcatcaggtgctctggtgtgacttg---taacccggcacatgttg 64
Query: 67 gagtacactc 76
|||||||||
Sbjct: 65 aagtacactc 74
>RF00732;mir-305;AAPP01015737.1/35950-36037 7217:Drosophila
ananassae
Length = 88
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 catgtctattgtacttcatcaggtgctctggtg 40
|||||||||||||||||||||||||||||||||
Sbjct: 8 catgtctattgtacttcatcaggtgctctggtg 40
>RF00732;mir-305;BABH01005296.1/11892-11978 7091:Bombyx mori
(domestic silkworm)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 attgtacttcatcaggtgctctggtg 40
||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40
>RF00732;mir-305;AADG05001619.1/14219-14305 7460:Apis mellifera
(honey bee)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 attgtacttcatcaggtgctctggtg 40
||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40
>RF00732;mir-305;AAZO01007192.1/28953-29038 121224:Pediculus
humanus corporis (human body louse)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 attgtacttcatcaggtgctctggt 39
|||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39
>RF00732;mir-305;ABJB010539510.1/4555-4465 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attgtacttcatcaggtgctctgg 38
||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctgg 38
