miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00844;mir-67;ABKP02019157.1/49006-49065 377271:Anopheles
          gambiae M
          Length = 60

 Score =  119 bits (60), Expect = 7e-27
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 19 cactcactcaacctgggtgtgatgcttttttgaatcatcacaacctccttgagtgagcga 78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactcactcaacctgggtgtgatgcttttttgaatcatcacaacctccttgagtgagcga 60

>RF00844;mir-67;AAJJ01001473.1/10807-10747 7070:Tribolium
          castaneum (red flour beetle)
          Length = 61

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 20 actcactcaacctgggtgtgatgcttttt-tgaatcatcacaacctccttgagtgagcga 78
          |||||||||||||||||||||||  |||  || | |||||||||||||||||||||||||
Sbjct: 2  actcactcaacctgggtgtgatgtgtttgctgtaccatcacaacctccttgagtgagcga 61

>RF00844;mir-67;AAZX01010522.1/11245-11164 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 82

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 actcactcaacctgggtgtgatgctt 45
          ||||||||||||||||||||||||||
Sbjct: 2  actcactcaacctgggtgtgatgctt 27

>RF00844;mir-67;AADG05000205.1/41347-41272 7460:Apis mellifera
          (honey bee)
          Length = 76

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 actcactcaacctgggtgtgatgctt 45
          ||||||||||||||||||||||||||
Sbjct: 2  actcactcaacctgggtgtgatgctt 27

>RF00844;mir-67;AAPU01010253.1/29382-29448 7230:Drosophila
          mojavensis
          Length = 67

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 catcacaacctccttgagtgagcga 78
          |||||||||||||||||||||||||
Sbjct: 43 catcacaacctccttgagtgagcga 67

>RF00844;mir-67;ABLF01022849.1/7851-7790 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 62

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 cacaacctccttgagtgagcga 78
          ||||||||||||||||||||||
Sbjct: 41 cacaacctccttgagtgagcga 62

>RF00844;mir-67;ABJB010869367.1/2416-2352 6945:Ixodes scapularis
          (black-legged tick)
          Length = 65

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catcacaacctccttgagtgag 75
          ||||||||||||||||||||||
Sbjct: 41 catcacaacctccttgagtgag 62