miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00717;mir-315;AAAB01006400.1/15231-15314 180454:Anopheles
          gambiae str. PEST
          Length = 84

 Score =  151 bits (76), Expect = 1e-36
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tataaaattttgattgttgctcagaaagccgtgtcgattaagcaattcgctttcgggcag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  tataaaattttgattgttgctcagaaagccgtgtcgattaagcaattcgctttcgggcag 64

                          
Query: 61 taatcaaagtcaaata 76
          ||||||||||||||||
Sbjct: 65 taatcaaagtcaaata 80




>RF00717;mir-315;AAGE02021501.1/12488-12571 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 84

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  tataaaattttgattgttgctcagaaagccgtgtcgattaagcaattcgctttcgggcag 60
          |||||||||||||||||||||||||||||||||    | || |   ||||||||| ||||
Sbjct: 5  tataaaattttgattgttgctcagaaagccgtgcatttgaaacgggtcgctttcgagcag 64

                          
Query: 61 taatcaaagtcaaata 76
          ||||||||||||||||
Sbjct: 65 taatcaaagtcaaata 80




>RF00717;mir-315;AASU01006755.1/588-667 7240:Drosophila simulans
          Length = 80

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  tataaaattttgattgttgctcagaaagcc 30
          |||| |||||||||||||||||||||||||
Sbjct: 5  tatataattttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAPQ01006582.1/536778-536860 7220:Drosophila
          erecta
          Length = 83

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  tataaaattttgattgttgctcagaaagcc 30
          |||| |||||||||||||||||||||||||
Sbjct: 5  tatataattttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAPU01011669.1/1431-1347 7230:Drosophila
          mojavensis
          Length = 85

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  tataaaattttgattgttgctcagaaagcc 30
          |||| |||||||||||||||||||||||||
Sbjct: 5  tatataattttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAPT01020729.1/201657-201576 7222:Drosophila
          grimshawi
          Length = 82

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  aattttgattgttgctcagaaagcc 30
          |||||||||||||||||||||||||
Sbjct: 10 aattttgattgttgctcagaaagcc 34




>RF00717;mir-315;ABLF01028780.1/3045-2960 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  attttgattgttgctcagaaagcc 30
          ||||||||||||||||||||||||
Sbjct: 11 attttgattgttgctcagaaagcc 34




>RF00717;mir-315;AANI01017430.1/85121-85040 7244:Drosophila
          virilis
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  attttgattgttgctcagaaagcc 30
          ||||||||||||||||||||||||
Sbjct: 11 attttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAJJ01004236.1/2476-2553 7070:Tribolium castaneum
          (red flour beetle)
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  ttttgattgttgctcagaaagccg 31
          ||||||||||||||||||||||||
Sbjct: 11 ttttgattgttgctcagaaagccg 34




>RF00717;mir-315;AAZX01000470.1/15987-15906 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 82

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttttgattgttgctcagaaagcc 30
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AADG05000960.1/7218-7138 7460:Apis mellifera
          (honey bee)
          Length = 81

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttttgattgttgctcagaaagcc 30
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAFS01000172.1/91075-90992 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttttgattgttgctcagaaagcc 30
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34