miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00727;bantam;AADG05005002.1/2155-2243 7460:Apis mellifera
          (honey bee)
          Length = 89

 Score =  172 bits (87), Expect = 5e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgaaaacgaaactggttttcacaatgatttgacagatagattcgattctgagatcattg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  tcgaaaacgaaactggttttcacaatgatttgacagatagattcgattctgagatcattg 62

                                     
Query: 61 tgaaagctgattttgttgaaaagtcga 87
          |||||||||||||||||||||||||||
Sbjct: 63 tgaaagctgattttgttgaaaagtcga 89




>RF00727;bantam;AAZX01004974.1/17134-17222 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 89

 Score =  117 bits (59), Expect = 2e-26
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 7  acgaaactggttttcacaatgatttgacagatagattcgattctgagatcattgtgaaag 66
          ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct: 9  acgaaactggttttcacaatgatttgacagatgtatttgattctgagatcattgtgaaag 68

                     
Query: 67 ctgattttgtt 77
          |||||||||||
Sbjct: 69 ctgattttgtt 79




>RF00727;bantam;AAJJ01000881.1/39195-39283 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score =  117 bits (59), Expect = 2e-26
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 7  acgaaactggttttcacaatgatttgacagatagattcgattctgagatcattgtgaaag 66
          |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 9  acgaaactggttttcacagtgatttgacagatatatttgattctgagatcattgtgaaag 68

                     
Query: 67 ctgattttgtt 77
          |||||||||||
Sbjct: 69 ctgattttgtt 79




>RF00727;bantam;AAZO01005717.1/66950-67042 121224:Pediculus
          humanus corporis (human body louse)
          Length = 93

 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 71/78 (91%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                      
Query: 3  gaaaacgaaactggttttcacaatgatttgacagatagatt---cgattctgagatcatt 59
          |||||||||||||||||||||||||||||| ||||||| ||     ||||||||||||||
Sbjct: 5  gaaaacgaaactggttttcacaatgatttgccagatagtttttgttattctgagatcatt 64

                            
Query: 60 gtgaaagctgattttgtt 77
          ||||||||||||||||||
Sbjct: 65 gtgaaagctgattttgtt 82




>RF00727;bantam;AADK01008828.1/6468-6379 7091:Bombyx mori
          (domestic silkworm)
          Length = 90

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 66/72 (91%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  acgaaactggttttcacaatgatttgacagatagattcg-attctgagatcattgtgaaa 65
          |||||||||||||||| ||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 9  acgaaactggttttcataatgatttgacagattgttttgtattctgagatcattgtgaaa 68

                      
Query: 66 gctgattttgtt 77
          ||| ||||||||
Sbjct: 69 gctaattttgtt 80




>RF00727;bantam;ABJB010305858.1/1270-1184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 87

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 48 tctgagatcattgtgaaagctgattttgttga 79
          ||||||||||||||||||||||||||||||||
Sbjct: 51 tctgagatcattgtgaaagctgattttgttga 82




>RF00727;bantam;AASC02061937.1/7510-7417 6500:Aplysia californica
          (California sea hare)
          Length = 94

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 48 tctgagatcattgtgaaagctgattttgt 76
          |||||||||||||||||| ||||||||||
Sbjct: 54 tctgagatcattgtgaaaactgattttgt 82



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 10 aaactggttttcacaatgatttgacagata 39
          ||||||||||||||| ||||||| ||||||
Sbjct: 12 aaactggttttcacagtgatttgccagata 41




>RF00727;bantam;ABLF01005214.1/5435-5342 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 94

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 46 attctgagatcattgtgaaagctgattt 73
          ||||||||||||||||||||||| ||||
Sbjct: 53 attctgagatcattgtgaaagctaattt 80




>RF00727;bantam;AAWU01005949.1/119500-119406 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 95

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tgagatcattgtgaaagctgattttgt 76
          |||||||||| ||||||||||||||||
Sbjct: 56 tgagatcattttgaaagctgattttgt 82




>RF00727;bantam;AAGE02003301.1/208408-208314 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 95

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tgagatcattgtgaaagctgattttgt 76
          |||||||||| ||||||||||||||||
Sbjct: 57 tgagatcattttgaaagctgattttgt 83




>RF00727;bantam;AAPU01011505.1/2277-2366 7230:Drosophila
          mojavensis
          Length = 90

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tgagatcattgtgaaagctgattttgt 76
          |||||||||| ||||||||||||||||
Sbjct: 53 tgagatcattttgaaagctgattttgt 79




>RF00727;bantam;AANI01017339.1/10975-11064 7244:Drosophila virilis
          Length = 90

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tgagatcattgtgaaagctgattttgt 76
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78