miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AADG05006757.1/17977-18057 7460:Apis mellifera
          (honey bee)
          Length = 81

 Score =  161 bits (81), Expect = 2e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 14 ctgggcgcctcgaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgt 73
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctgggcgcctcgaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgt 60

                               
Query: 74 cacatccagccaaccgaacgc 94
          |||||||||||||||||||||
Sbjct: 61 cacatccagccaaccgaacgc 81




>RF00661;mir-31;AAZX01004302.1/23296-23375 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 80

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 25 gaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgtcacatccagcc 84
          ||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||
Sbjct: 12 gaaggcaagatgtcggcatagctgatgc-ttttgaaatttcggctgtgtcacatccagcc 70

                    
Query: 85 aaccgaacgc 94
          | || |||||
Sbjct: 71 agccaaacgc 80




>RF00661;mir-31;AAZO01004538.1/561-481 121224:Pediculus humanus
          corporis (human body louse)
          Length = 81

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 27 aggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgtcacatccagcca 85
          |||||||||||||||||||||||   |||| ||| || ||||||||||||||| |||||
Sbjct: 14 aggcaagatgtcggcatagctgaaatgattataatatgcggctgtgtcacatcgagcca 72




>RF00661;mir-31;AAQB01006276.1/72264-72183 7260:Drosophila
          willistoni
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 28 ggcaagatgtcggcatagctgat 50
          |||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctgat 37




>RF00661;mir-31;AAJJ01000269.1/62248-62171 7070:Tribolium
          castaneum (red flour beetle)
          Length = 78

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 aggcaagatgtcggcatagctga 49
          |||||||||||||||||||||||
Sbjct: 14 aggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAPQ01007042.1/187291-187204 7220:Drosophila
          erecta
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggcaagatgtcggcatagctga 49
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAIZ01001980.1/15086-15173 7234:Drosophila
          persimilis
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggcaagatgtcggcatagctga 49
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAGH01011800.1/12196-12109 7240:Drosophila
          simulans
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggcaagatgtcggcatagctga 49
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AANI01014909.1/166793-166706 7244:Drosophila
          virilis
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggcaagatgtcggcatagctga 49
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAPU01010140.1/40129-40215 7230:Drosophila
          mojavensis
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggcaagatgtcggcatagctga 49
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36