miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 26 caactgtgcattgtagttgcattgcatgaaatataactatgcaatacttctacagtgcaa 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caactgtgcattgtagttgcattgcatgaaatataactatgcaatacttctacagtgcaa 60
Query: 86 ctcttg 91
||||||
Sbjct: 61 ctcttg 66
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatgaa 55
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgaa 30
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatga 54
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatga 29
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAYZ01156209.1/2544-2612 9978:Ochotona princeps
(American pika)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAWZ01041754.1/18913-18979 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;ABEP02003886.1/24922-24856 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;ABEP02003886.1/24513-24447 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAJJ01000068.1/107964-107901 7070:Tribolium
castaneum (red flour beetle)
Length = 64
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcattgtagttgcattgcatg 53
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgtgcattgtagttgcattgca 51
||||||||||||||||||||||
Sbjct: 5 tgtgcattgtagttgcattgca 26
