miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;AADG05003176.1/75746-75815 7460:Apis mellifera
          (honey bee)
          Length = 70

 Score =  139 bits (70), Expect = 8e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 18 gccggtcccctgagaccctaacttgtgacgtcgcgaccgatatctcacaggctagattct 77
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gccggtcccctgagaccctaacttgtgacgtcgcgaccgatatctcacaggctagattct 60

                    
Query: 78 ctggtattgg 87
          ||||||||||
Sbjct: 61 ctggtattgg 70




>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
          (green anole)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
          (zebrafish)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 25 ccctgagaccctaacttgtgacgt 48
          ||||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgacgt 31




>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
          S
          Length = 70

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 25 ccctgagaccctaacttgtgac 46
          ||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgac 29




>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
          mojavensis
          Length = 69

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 25 ccctgagaccctaacttgtgac 46
          ||||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtgac 29