miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 11 gtctggtttccgtaagatatgtttgatattcttggttgttttttaaagaatcgaccagga 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctggtttccgtaagatatgtttgatattcttggttgttttttaaagaatcgaccagga 60
Query: 71 atcaaacatattattatggtggtcagaa 98
||||||||||||||||||||||||||||
Sbjct: 61 atcaaacatattattatggtggtcagaa 88
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgtt---ttttaaagaatcgaccaggaatcaaacatat 81
|||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
Query: 82 tattatggtggtca 95
||||| |||||||
Sbjct: 75 tattactgtggtca 88
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgttttttaaagaatcgaccaggaatcaaacatattat 84
||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtataataa--taacgaccaggaatcaaacatattat 72
Query: 85 ta 86
||
Sbjct: 73 ta 74
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 23 taagatatgtttgatattcttggttgttttttaaagaatcgaccaggaatcaaacatatt 82
||||||||||||||||||||||||||| |||| | | || |||||| |||||||||||
Sbjct: 13 taagatatgtttgatattcttggttgtattttta--attcacccaggagtcaaacatatt 70
Query: 83 attat 87
|||||
Sbjct: 71 attat 75
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgtttt 52
||||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtttt 42
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 56.0 bits (28), Expect = 9e-08
Identities = 63/74 (85%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 16 gtttccgtaagatatgtttgatattcttggttgtt---ttttaaagaatcgaccaggaat 72
||||| || |||||||||||||||||||||||||| ||| || ||| ||||||||
Sbjct: 6 gtttcggtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaat 65
Query: 73 caaacatattatta 86
||||||||||||||
Sbjct: 66 caaacatattatta 79
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgttt 51
|||||||||||||||||||||||||||
Sbjct: 16 agatatgtttgatattcttggttgttt 42
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgtt 50
||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgtt 50
||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgt 49
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 agatatgtttgatattcttggttgt 49
|||||||||||||||||||||||||
Sbjct: 16 agatatgtttgatattcttggttgt 40
