miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00730;mir-277;AADG05001988.1/82689-82784 7460:Apis mellifera
          (honey bee)
          Length = 96

 Score =  167 bits (84), Expect = 3e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcagttggggctcgtgccagatgcgcgtttacacgggccctgaatactgtaaatgcact 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  ggcagttggggctcgtgccagatgcgcgtttacacgggccctgaatactgtaaatgcact 64

                                  
Query: 61 atctggtacgacatctctcctgtc 84
          ||||||||||||||||||||||||
Sbjct: 65 atctggtacgacatctctcctgtc 88




>RF00730;mir-277;AAZX01003771.1/6490-6590 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 101

 Score =  125 bits (63), Expect = 9e-29
 Identities = 75/78 (96%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  tggggctcgtgccagatgcgcgtttacacggg--ccctgaatactgtaaatgcactatct 64
          |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 13 tggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgcactatct 72

                            
Query: 65 ggtacgacatctctcctg 82
          ||||||||||||||||||
Sbjct: 73 ggtacgacatctctcctg 90




>RF00730;mir-277;BAAB01014298.1/12021-12140 7091:Bombyx mori
           (domestic silkworm)
          Length = 120

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 47  actgtaaatgcactatctggtacgacatc 75
           |||||||||||||||||||||||||||||
Sbjct: 75  actgtaaatgcactatctggtacgacatc 103




>RF00730;mir-277;AAZO01001184.1/8581-8481 121224:Pediculus humanus
          corporis (human body louse)
          Length = 101

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 48 ctgtaaatgcactatctggtacgacat 74
          |||||||||||||||||||||||||||
Sbjct: 57 ctgtaaatgcactatctggtacgacat 83




>RF00730;mir-277;AAJJ01000475.1/30018-29916 7070:Tribolium
          castaneum (red flour beetle)
          Length = 103

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 43 gaatactgtaaatgcactatctggtacgaca 73
          |||| ||||||||||||||||||||||||||
Sbjct: 54 gaattctgtaaatgcactatctggtacgaca 84



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 cgtgccagatgcgcgtttacac 35
          ||||||||||||||||||||||
Sbjct: 18 cgtgccagatgcgcgtttacac 39




>RF00730;mir-277;AAGE02012646.1/3549-3655 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 107

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 tgtaaatgcactatctggtacgacat 74
          ||||||||||||||||||||||||||
Sbjct: 64 tgtaaatgcactatctggtacgacat 89




>RF00730;mir-277;ABKP02013266.1/5414-5519 377271:Anopheles gambiae
          M
          Length = 106

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 tgtaaatgcactatctggtacgacat 74
          ||||||||||||||||||||||||||
Sbjct: 63 tgtaaatgcactatctggtacgacat 88




>RF00730;mir-277;AANI01014607.1/369382-369282 7244:Drosophila
          virilis
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 tgtaaatgcactatctggtacgacat 74
          ||||||||||||||||||||||||||
Sbjct: 58 tgtaaatgcactatctggtacgacat 83




>RF00730;mir-277;ABLF01050542.1/1-88 7029:Acyrthosiphon pisum (pea
          aphid)
          Length = 88

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tgtaaatgcactatctggtacgaca 73
          |||||||||||||||||||||||||
Sbjct: 60 tgtaaatgcactatctggtacgaca 84