miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00747;mir-283;AADG05008150.1/23792-23703 7460:Apis mellifera
          (honey bee)
          Length = 90

 Score =  178 bits (90), Expect = 9e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  taatctggtgatgtagtcaaatatcagctggtaattctgggattttgacaataacccagg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taatctggtgatgtagtcaaatatcagctggtaattctgggattttgacaataacccagg 60

                                        
Query: 63 attcttgctggtatccggctacgaactgga 92
          ||||||||||||||||||||||||||||||
Sbjct: 61 attcttgctggtatccggctacgaactgga 90




>RF00747;mir-283;AAZX01000006.1/24204-24295 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 92

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 70/79 (88%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                      
Query: 15 gtagtcaaatatcagctggtaattctgggattttgacaat--aacccaggattcttgctg 72
          |||||||||||||||||||||||||||||||  | |  ||  | ||||||||||||||||
Sbjct: 13 gtagtcaaatatcagctggtaattctgggatacttattatgcagcccaggattcttgctg 72

                             
Query: 73 gtatccggctacgaactgg 91
          |||||||| ||||||||||
Sbjct: 73 gtatccggttacgaactgg 91




>RF00747;mir-283;AAQB01006319.1/8842-8742 7260:Drosophila
          willistoni
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;AAPU01008564.1/40966-41063 7230:Drosophila
          mojavensis
          Length = 98

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;BAAB01105947.1/481-397 7091:Bombyx mori (domestic
          silkworm)
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 17 aaatatcagctggtaattctggg 39




>RF00747;mir-283;AAJJ01001605.1/25781-25866 7070:Tribolium
          castaneum (red flour beetle)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 17 aaatatcagctggtaattctggg 39




>RF00747;mir-283;AAWU01005348.1/2399-2495 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 aatatcagctggtaattctggg 43
          ||||||||||||||||||||||
Sbjct: 18 aatatcagctggtaattctggg 39




>RF00747;mir-283;AAGE02004323.1/32429-32333 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 aatatcagctggtaattctggg 43
          ||||||||||||||||||||||
Sbjct: 18 aatatcagctggtaattctggg 39