miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 137 bits (69), Expect = 3e-32
Identities = 76/77 (98%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 4 aaaccccctgtacgtatactgaatgtatcctgagtgtatttctgtccggtataccttcag 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4 aaaccccctgtacgtatactgaatgtatcctgagtgt-tttctgtccggtataccttcag 62
Query: 64 tatacgtaacaggaggc 80
|||||||||||||||||
Sbjct: 63 tatacgtaacaggaggc 79
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 91.7 bits (46), Expect = 1e-18
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 14 tacgtatactgaatgtatcctgagtgtatttctgtccggtataccttcagtatacgtaac 73
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 14 tacgtatactgaatgtatcctgagtgta-tcctatccggtataccttcagtatacgtaac 72
Query: 74 aggagg 79
| ||||
Sbjct: 73 acgagg 78
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 83.8 bits (42), Expect = 3e-16
Identities = 62/68 (91%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 11 ctgtacgtatactgaatgtatcctgagtgt---atttctgtccggtataccttcagtata 67
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtata 70
Query: 68 cgtaacag 75
||||||||
Sbjct: 71 cgtaacag 78
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 9 ccctgtacgtatactgaatgtatcctgagtgtattt-----ctgtccggtataccttcag 63
||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 9 ccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcag 68
Query: 64 tatacgtaacagg 76
|||||||||||||
Sbjct: 69 tatacgtaacagg 81
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/72 (90%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 15 acgtatactgaatgtatcctgagtg-tatttctgtccggtataccttcagtatacgtaac 73
||||||||||||||||||||||||| || || | |||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgctacttat--ccggtataccttcagtatacgtaac 72
Query: 74 aggaggctacac 85
| ||||| ||||
Sbjct: 73 aagaggcgacac 84
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 16 cgtatactgaatgtatcctgagtgtatttctgtccggtataccttcagtatacgtaac 73
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 16 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 73
