miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 2 cgcgcagctccatacttctttacattccatatgattacaatgactatgggaagtaaggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cgcgcagctccatacttctttacattccatatgattacaatgactatgggaagtaaggaa 16
Query: 62 gcacggaacttgcgc 76
|||||||||||||||
Sbjct: 15 gcacggaacttgcgc 1
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 79.8 bits (40), Expect = 5e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccatatgattacaatgactatgggaagtaaggaagcacgg 67
||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||
Sbjct: 68 gctccatacttctttacattccatacgttta-aagcactatgggaagtaaggaagcacgg 10
Query: 68 aact 71
||||
Sbjct: 9 aact 6
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 3 gcgcagctccatacttctttacattccatatgattacaatgactatgggaagtaaggaag 62
|||||||||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 73 gcgcagctccatacttctttacattccatacg-tcgcatccactatgggaagtaaggaag 15
Query: 63 cacggaac 70
||||||||
Sbjct: 14 cacggaac 7
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 3 gcgcagctccatacttctttacattccatatgattacaatgactatgggaagtaaggaag 62
|||| ||||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 73 gcgcggctccatacttctttacattccatacg-tcacgtgcactatgggaagtaaggaag 15
Query: 63 cacggaac 70
||||||||
Sbjct: 14 cacggaac 7
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccatatg 34
|||||||||||||||||||||||||||
Sbjct: 71 gctccatacttctttacattccatatg 45
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccatatg 34
|||||||||||||||||||||||||||
Sbjct: 71 gctccatacttctttacattccatatg 45
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccatatg 34
|||||||||||||||||||||||||||
Sbjct: 71 gctccatacttctttacattccatatg 45
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccata 32
|||||||||||||||||||||||||
Sbjct: 68 gctccatacttctttacattccata 44
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 46 tatgggaagtaaggaagcacgga 68
|||||||||||||||||||||||
Sbjct: 31 tatgggaagtaaggaagcacgga 9
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccata 32
|||||||||||||||||||||||||
Sbjct: 92 gctccatacttctttacattccata 68
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccata 32
|||||||||||||||||||||||||
Sbjct: 73 gctccatacttctttacattccata 49
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gctccatacttctttacattccata 32
|||||||||||||||||||||||||
Sbjct: 73 gctccatacttctttacattccata 49
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 ctccatacttctttacattccata 32
||||||||||||||||||||||||
Sbjct: 73 ctccatacttctttacattccata 50
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 tatgggaagtaaggaagcacgg 67
||||||||||||||||||||||
Sbjct: 31 tatgggaagtaaggaagcacgg 10
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 catacttctttacattccatat 33
||||||||||||||||||||||
Sbjct: 65 catacttctttacattccatat 44
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 catacttctttacattccatat 33
||||||||||||||||||||||
Sbjct: 77 catacttctttacattccatat 56
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 catacttctttacattccatat 33
||||||||||||||||||||||
Sbjct: 69 catacttctttacattccatat 48
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 catacttctttacattccatat 33
||||||||||||||||||||||
Sbjct: 69 catacttctttacattccatat 48
