miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
          silkworm)
          Length = 69

 Score =  137 bits (69), Expect = 2e-32
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 10 tcgctcacaaagtggttgtcgtatgcgtttttactttggccatatcacagccagctttga 69
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcgctcacaaagtggttgtcgtatgcgtttttactttggccatatcacagccagctttga 60

                   
Query: 70 tgagcgatg 78
          |||||||||
Sbjct: 61 tgagcgatg 69




>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
          corporis (human body louse)
          Length = 61

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 33 catatcacagccagctttgatgagcg 58




>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 68

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagcg 65




>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
          (honey bee)
          Length = 68

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagcg 65




>RF00047;mir-2;AAWU01020422.1/10643-10573 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 71

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 48 gccatatcacagccagctttgatgagcgat 77
          |||||||||||||||||||||| |||||||
Sbjct: 41 gccatatcacagccagctttgaagagcgat 70




>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatgagcg 62




>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatgagcg 62




>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagcg 65




>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
          (California sea hare)
          Length = 66

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 38 catatcacagccagctttgatgagc 62




>RF00047;mir-2;AAWU01020422.1/10370-10299 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 72

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 44 catatcacagccagctttgatgagc 68




>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 67

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 39 catatcacagccagctttgatgagc 63




>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
          gambiae str. PEST
          Length = 76

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 48 catatcacagccagctttgatgagc 72




>RF00047;mir-2;AAQB01006412.1/121627-121699 7260:Drosophila
          willistoni
          Length = 73

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatgagc 69




>RF00047;mir-2;AAFS01000655.1/43310-43241 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 70

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 42 catatcacagccagctttgatgagc 66




>RF00047;mir-2;AASS01038618.1/536-465 7240:Drosophila simulans
          Length = 72

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 44 catatcacagccagctttgatgagc 68




>RF00047;mir-2;AAPU01010520.1/77496-77569 7230:Drosophila
          mojavensis
          Length = 74

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 46 catatcacagccagctttgatgagc 70




>RF00047;mir-2;AANI01013749.1/162154-162082 7244:Drosophila
          virilis
          Length = 73

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatgagc 69




>RF00047;mir-2;AANI01013749.1/161880-161816 7244:Drosophila
          virilis
          Length = 65

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 catatcacagccagctttgatgagc 74
          |||||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatgagc 61




>RF00047;mir-2;AASC02030054.1/10042-10110 6500:Aplysia californica
          (California sea hare)
          Length = 69

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 52 tatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||
Sbjct: 43 tatcacagccagctttgatgagcg 66




>RF00047;mir-2;AAZO01007079.1/41397-41469 121224:Pediculus humanus
          corporis (human body louse)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 catatcacagccagctttgatgag 73
          ||||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatgag 68




>RF00047;mir-2;AAZX01013101.1/18917-18986 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 70

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 10 tcgctcacaaagtggttgtcgtatg-cgtttttactttggc-catatcacagccagcttt 67
          ||||||||||||||| ||| ||||| ||  ||| ||||||| ||||||||||||||||||
Sbjct: 1  tcgctcacaaagtggctgttgtatgtcggattt-ctttggctcatatcacagccagcttt 59

                  
Query: 68 gatgagcg 75
          | ||||||
Sbjct: 60 gttgagcg 67




>RF00047;mir-2;AADG05000005.1/26814-26880 7460:Apis mellifera
          (honey bee)
          Length = 67

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 52 tatcacagccagctttgatgagcg 75
          ||||||||||||||||||||||||
Sbjct: 41 tatcacagccagctttgatgagcg 64




>RF00047;mir-2;AASC02030054.1/11043-11110 6500:Aplysia californica
          (California sea hare)
          Length = 68

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 50 catatcacagccagctttgatga 72
          |||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatga 62




>RF00047;mir-2;AAZO01007079.1/40138-40206 121224:Pediculus humanus
          corporis (human body louse)
          Length = 69

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 43 tatcacagccagctttgatgagc 65




>RF00047;mir-2;ABLF01009126.1/4927-4856 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 72

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 46 tatcacagccagctttgatgagc 68




>RF00047;mir-2;BABH01007323.1/6199-6133 7091:Bombyx mori (domestic
          silkworm)
          Length = 67

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 41 tatcacagccagctttgatgagc 63




>RF00047;mir-2;AAZX01013101.1/18328-18390 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 63

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 37 tatcacagccagctttgatgagc 59




>RF00047;mir-2;AADG05000005.1/25028-25089 7460:Apis mellifera
          (honey bee)
          Length = 62

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 36 tatcacagccagctttgatgagc 58




>RF00047;mir-2;AAGE02012793.1/18045-17973 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 73

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 47 tatcacagccagctttgatgagc 69




>RF00047;mir-2;AAGE02012793.1/17551-17479 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 73

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 catatcacagccagctttgatgagcga 76
          |||||||||||||||||||| ||||||
Sbjct: 45 catatcacagccagctttgaagagcga 71




>RF00047;mir-2;ABKQ02016231.1/17544-17613 377270:Anopheles gambiae
          S
          Length = 70

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66




>RF00047;mir-2;AANI01013749.1/162474-162400 7244:Drosophila
          virilis
          Length = 75

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 catatcacagccagctttgatgagcga 76
          |||||||||||||||||||| ||||||
Sbjct: 47 catatcacagccagctttgaggagcga 73




>RF00047;mir-2;AAJJ01001714.1/2295-2359 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 52 tatcacagccagctttgatgagc 74
          |||||||||||||||||||||||
Sbjct: 39 tatcacagccagctttgatgagc 61




>RF00047;mir-2;AAQA01003088.1/958-1028 6279:Brugia malayi
          Length = 71

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 43 catatcacagccagctttgatg 64




>RF00047;mir-2;AAGD02006756.1/79087-79015 31234:Caenorhabditis
          remanei
          Length = 73

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66




>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
          briggsae
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 62 catatcacagccagctttgatg 83




>RF00047;mir-2;Z83731.1/29638-29566 6239:Caenorhabditis elegans
          Length = 73

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66




>RF00047;mir-2;ABEG01010026.1/20408-20482 135651:Caenorhabditis
          brenneri
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 47 catatcacagccagctttgatg 68




>RF00047;mir-2;AAZX01013101.1/19937-20004 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 catatcacagccagctttgatg 71
          ||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatg 61




>RF00047;mir-2;AAAB01008807.1/11606832-11606920 180454:Anopheles
          gambiae str. PEST
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          |||||||||||||||||||| |||||
Sbjct: 61 catatcacagccagctttgaagagcg 86




>RF00047;mir-2;ABKP02009549.1/3713-3802 377271:Anopheles gambiae M
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          |||||||||||||||||||| |||||
Sbjct: 62 catatcacagccagctttgaagagcg 87




>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
          (fruit fly)
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 catatcacagccagctttgatgagcg 75
          |||||||||||||||||||| |||||
Sbjct: 41 catatcacagccagctttgaggagcg 66