miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;BABH01007323.1/5662-5596 7091:Bombyx mori (domestic
silkworm)
Length = 67
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 6 gaactcgacaaggtggttgtgacatgggggctcaggatcatatcacagccagctttgttg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaactcgacaaggtggttgtgacatgggggctcaggatcatatcacagccagctttgttg 60
Query: 66 agttctc 72
|||||||
Sbjct: 61 agttctc 67
>RF00047;mir-2;AAZX01013101.1/18917-18986 7425:Nasonia vitripennis
(jewel wasp)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccagctttgttgag 65
>RF00047;mir-2;ABEG01010026.1/20408-20482 135651:Caenorhabditis
brenneri
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 aggatcatatcacagccagctttg 62
||||||||||||||||||||||||
Sbjct: 42 aggatcatatcacagccagctttg 65
>RF00047;mir-2;AAZO01007079.1/41397-41469 121224:Pediculus humanus
corporis (human body louse)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 atcatatcacagccagctttgttgagt 68
||||||||||||||||||||| |||||
Sbjct: 43 atcatatcacagccagctttgatgagt 69
>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 atcatatcacagccagctttgttgag 67
||||||||||||||||||||| ||||
Sbjct: 35 atcatatcacagccagctttgatgag 60
>RF00047;mir-2;AM453782.2/459-389 29760:Vitis vinifera
Length = 71
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 atcatatcacagccagctttg 62
|||||||||||||||||||||
Sbjct: 41 atcatatcacagccagctttg 61
>RF00047;mir-2;AAGD02006756.1/79087-79015 31234:Caenorhabditis
remanei
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 atcatatcacagccagctttg 62
|||||||||||||||||||||
Sbjct: 43 atcatatcacagccagctttg 63
>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
(California sea hare)
Length = 66
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 37 tcatatcacagccagctttgatgag 61
>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
corporis (human body louse)
Length = 61
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 32 tcatatcacagccagctttgatgag 56
>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
(pea aphid)
Length = 68
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 39 tcatatcacagccagctttgatgag 63
>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
(honey bee)
Length = 68
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 39 tcatatcacagccagctttgatgag 63
>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
(yellow fever mosquito)
Length = 67
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 38 tcatatcacagccagctttgatgag 62
>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
gambiae str. PEST
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 47 tcatatcacagccagctttgatgag 71
>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 36 tcatatcacagccagctttgatgag 60
>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
(black-legged tick)
Length = 68
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccagctttgttgag 67
|||||||||||||||||||| ||||
Sbjct: 39 tcatatcacagccagctttgatgag 63
