miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BABH01038615.1/30-88 7091:Bombyx mori (domestic
          silkworm)
          Length = 59

 Score =  117 bits (59), Expect = 3e-26
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                     
Query: 21 cgctttggcgatttagctccgtgacatcattccgttcataaagctagattaccaaagca 79
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cgctttggcgatttagctccgtgacatcattccgttcataaagctagattaccaaagca 59

>RF00237;mir-9;AAPU01010522.1/88150-88211 7230:Drosophila
          mojavensis
          Length = 62

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ttcataaagctagattaccaaagca 79
          |||||||||||||||||||||||||
Sbjct: 38 ttcataaagctagattaccaaagca 62

>RF00237;mir-9;AAZO01004036.1/9144-9086 121224:Pediculus humanus
          corporis (human body louse)
          Length = 59

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 56 tcataaagctagattaccaaagca 79
          ||||||||||||||||||||||||
Sbjct: 24 tcataaagctagattaccaaagca 1

>RF00237;mir-9;AADG05005335.1/11528-11468 7460:Apis mellifera
          (honey bee)
          Length = 61

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 tcataaagctagattaccaaagca 79
          ||||||||||||||||||||||||
Sbjct: 38 tcataaagctagattaccaaagca 61

>RF00237;mir-9;AAJJ01001943.1/9027-9086 7070:Tribolium castaneum
          (red flour beetle)
          Length = 60

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 tcataaagctagattaccaaagca 79
          ||||||||||||||||||||||||
Sbjct: 37 tcataaagctagattaccaaagca 60