miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;BAAB01088495.1/2035-1935 7091:Bombyx mori
          (domestic silkworm)
          Length = 101

 Score =  178 bits (90), Expect = 8e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  taacacgcttggaggtcacgcgtattcttggggaattaacacatatgtgagatgttattg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  taacacgcttggaggtcacgcgtattcttggggaattaacacatatgtgagatgttattg 64

                                        
Query: 61 cttgagaatacacgtagctgacaaggagta 90
          ||||||||||||||||||||||||||||||
Sbjct: 65 cttgagaatacacgtagctgacaaggagta 94




>RF00694;mir-137;AAZO01004444.1/55394-55292 121224:Pediculus
          humanus corporis (human body louse)
          Length = 103

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 68/73 (93%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 ggtcacgcgtattcttggggaattaacacat-atgtgagatgttattgcttgagaataca 72
          ||||||||||||||||||||||||||||||  |   ||||||||||||||||||||||||
Sbjct: 19 ggtcacgcgtattcttggggaattaacacaccaaaagagatgttattgcttgagaataca 78

                       
Query: 73 cgtagctgacaag 85
          |||||||||||||
Sbjct: 79 cgtagctgacaag 91




>RF00694;mir-137;AAJJ01002111.1/15264-15166 7070:Tribolium
          castaneum (red flour beetle)
          Length = 99

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 67/73 (91%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 ggtcacgcgtattcttggggaattaacacatatgt-gagatgttattgcttgagaataca 72
          ||||||| ||||||||||| |||||||||||||   | ||||||||||||||||||||||
Sbjct: 17 ggtcacgtgtattcttgggtaattaacacatattcagggatgttattgcttgagaataca 76

                       
Query: 73 cgtagctgacaag 85
          |||||||||||||
Sbjct: 77 cgtagctgacaag 89




>RF00694;mir-137;AADG05005118.1/28931-28831 7460:Apis mellifera
          (honey bee)
          Length = 101

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                      
Query: 18 acgcgtattcttggggaattaacacatatgtgagatgttattgcttgagaatacacgtag 77
          |||||||||||||||||||||||||| || || | |||||||||||||||||||||||||
Sbjct: 22 acgcgtattcttggggaattaacacacatttgcgctgttattgcttgagaatacacgtag 81




>RF00694;mir-137;ABLF01001266.1/4970-5069 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 100

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 61/68 (89%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                      
Query: 19 cgcgtattcttggggaattaacacatatgtgaga-tgttattgcttgagaatacacgtag 77
          ||||||||||||||  || ||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 23 cgcgtattcttgggacat-aacacatatttaagactgttattgcttgagaatacacgtag 81

                  
Query: 78 ctgacaag 85
           |||||||
Sbjct: 82 ttgacaag 89




>RF00694;mir-137;AAGE02029705.1/92443-92543 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 101

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 61/70 (87%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 17 cacgcgtattcttggggaattaacaca-tatgtgagatgttattgcttgagaatacacgt 75
          ||||||||||||||||  ||||||||| | | |  | |||||||||||||||||||||||
Sbjct: 21 cacgcgtattcttgggttattaacacactgtttatgttgttattgcttgagaatacacgt 80

                    
Query: 76 agctgacaag 85
          || |||||||
Sbjct: 81 agttgacaag 90




>RF00694;mir-137;AAGJ02120953.1/3113-3013 7668:Strongylocentrotus
          purpuratus
          Length = 101

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 51 gatgttattgcttgagaatacacgtag 77
          |||||||||||||||||||||||||||
Sbjct: 56 gatgttattgcttgagaatacacgtag 82




>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
          (Japanese medaka)
          Length = 99

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 51 gatgttattgcttgagaatacacgtagctga 81
          ||||||||||||||||||||| |||||||||
Sbjct: 54 gatgttattgcttgagaatacgcgtagctga 84




>RF00694;mir-137;ABKQ02013341.1/3039-2937 377270:Anopheles gambiae
          S
          Length = 103

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 53 tgttattgcttgagaatacacgtagctgac 82
          ||||||||||||||||||||||||| ||||
Sbjct: 58 tgttattgcttgagaatacacgtagttgac 87




>RF00694;mir-137;AAQB01009904.1/3815-3716 7260:Drosophila
          willistoni
          Length = 100

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 57 atgttattgcttgagaatacacgtag 82




>RF00694;mir-137;AAFS01000057.1/187400-187500 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 56 atgttattgcttgagaatacacgtag 81




>RF00694;mir-137;AAPP01018794.1/261725-261826 7217:Drosophila
          ananassae
          Length = 102

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 57 atgttattgcttgagaatacacgtag 82




>RF00694;mir-137;AASR01013769.1/615-715 7240:Drosophila simulans
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 56 atgttattgcttgagaatacacgtag 81




>RF00694;mir-137;AANI01011213.1/2061-1961 7244:Drosophila virilis
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 57 atgttattgcttgagaatacacgtag 82




>RF00694;mir-137;AAPU01010131.1/289658-289758 7230:Drosophila
          mojavensis
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 atgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||||||||
Sbjct: 57 atgttattgcttgagaatacacgtag 82




>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 101

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 tgttattgcttgagaatacacgtag 77
          |||||||||||||||||||||||||
Sbjct: 56 tgttattgcttgagaatacacgtag 80




>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon
          nigroviridis
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 gatgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||| |||||
Sbjct: 54 gatgttattgcttgagaatacgcgtag 80




>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
          fuelleborni
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 gatgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||| |||||
Sbjct: 55 gatgttattgcttgagaatacgcgtag 81




>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
          (Japanese medaka)
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 gatgttattgcttgagaatacacgtag 77
          ||||||||||||||||||||| |||||
Sbjct: 54 gatgttattgcttgagaatacgcgtag 80




>RF00694;mir-137;ABJB010513068.1/3224-3122 6945:Ixodes scapularis
          (black-legged tick)
          Length = 103

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 53 tgttattgcttgagaatacacgt 75
          |||||||||||||||||||||||
Sbjct: 59 tgttattgcttgagaatacacgt 81