miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
          (domestic silkworm)
          Length = 89

 Score =  176 bits (89), Expect = 3e-44
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  agccgcgcgtcgtcgagatatgtttgatattcttggttgtttgttttggatcacccggga 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agccgcgcgtcgtcgagatatgtttgatattcttggttgtttgttttggatcacccggga 60

                                       
Query: 62 atcaaacatattactctacgaccgcggcc 90
          |||||||||||||||||||||||||||||
Sbjct: 61 atcaaacatattactctacgaccgcggcc 89




>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
          humanus corporis (human body louse)
          Length = 87

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 16 gagatatgtttgatattcttggttgttt 43
          ||||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgttt 41




>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 85

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 16 gagatatgtttgatattcttggttgtt 42
          |||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40




>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
          (honey bee)
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 agatatgtttgatattcttggttgttt 43
          |||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttt 41




>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 91

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 16 gagatatgtttgatattcttggttgtt 42
          |||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40




>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
          gambiae str. PEST
          Length = 91

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 16 gagatatgtttgatattcttggttgtt 42
          |||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40




>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
          mojavensis
          Length = 90

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 16 gagatatgtttgatattcttggttgtt 42
          |||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40




>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
          (black-legged tick)
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 cgagatatgtttgatattcttggttgt 41
          |||||||||||||||||||||||||||
Sbjct: 14 cgagatatgtttgatattcttggttgt 40




>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 gagatatgtttgatattcttggttgt 41
          ||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgt 39




>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
          (red flour beetle)
          Length = 87

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                    
Query: 17 agatatgtttgatattcttggttgtttgttttggatcacccgggaatcaaacatatta 74
          ||||||||||||||||||||||||| | ||||   |||||| ||| ||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtat-ttttaattcacccaggagtcaaacatatta 71




>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 85

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 agatatgtttgatattcttggttgt 41
          |||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39