miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
          silkworm)
          Length = 90

 Score =  167 bits (84), Expect = 3e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggtaattaccactagcgaggtatagagttcctacgtatgctaacactgtaggaacttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  ctggtaattaccactagcgaggtatagagttcctacgtatgctaacactgtaggaacttc 61

                                  
Query: 61 ataccgtgctcttgggtttgccaa 84
          ||||||||||||||||||||||||
Sbjct: 62 ataccgtgctcttgggtttgccaa 85




>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 accactagcgaggtatagagttcctacgt-atgctaacactgtaggaacttcataccgtg 68
          ||||||||||||||||||||||||||||| ||  |    |||||||||||||||||||||
Sbjct: 9  accactagcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtg 68

                 
Query: 69 ctcttgg 75
          |||||||
Sbjct: 69 ctcttgg 75




>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
          (honey bee)
          Length = 92

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 agcgaggtatagagttcctacgta-tgctaacactgtaggaacttcataccgtgctcttg 74
          |||||||||||||||||||||||| || | | |  |||||||||||||||||||||||||
Sbjct: 18 agcgaggtatagagttcctacgtagtgttcagaaagtaggaacttcataccgtgctcttg 77

           
Query: 75 g 75
          |
Sbjct: 78 g 78




>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
          corporis (human body louse)
          Length = 91

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 47 actgtaggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||||||
Sbjct: 49 actgtaggaacttcataccgtgctcttgg 77




>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 97

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 10 accactagcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||||||||
Sbjct: 10 accactagcgaggtatagagttcctacgt 38



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          ||||||||||||||||||||||||||
Sbjct: 59 gtaggaacttcataccgtgctcttgg 84




>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
          gambiae S
          Length = 95

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 49 tgtaggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||||
Sbjct: 56 tgtaggaacttcataccgtgctcttgg 82



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 agcgaggtatagagttcctacg 37
          ||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacg 38




>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 92

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          ||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgg 78




>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 94

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          ||||||||||||||||||||||||||
Sbjct: 56 gtaggaacttcataccgtgctcttgg 81



 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 agcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39




>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
          virilis
          Length = 93

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          ||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgg 80



 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 agcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39




>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 97

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 taggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgg 84



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ctagcgaggtatagagttccta 35
          ||||||||||||||||||||||
Sbjct: 14 ctagcgaggtatagagttccta 35




>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 95

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 taggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||
Sbjct: 58 taggaacttcataccgtgctcttgg 82




>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
          gambiae M
          Length = 100

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 taggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgg 87




>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
          S
          Length = 100

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 taggaacttcataccgtgctcttgg 75
          |||||||||||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgg 87




>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 95

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 agcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||
Sbjct: 19 agcgaggtatagagttcctacgt 41



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          |||||||||| |||||||||||||||
Sbjct: 57 gtaggaacttaataccgtgctcttgg 82




>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
          melanogaster (fruit fly)
          Length = 94

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 agcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||
Sbjct: 19 agcgaggtatagagttcctacgt 41



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          |||||||||| |||||||||||||||
Sbjct: 56 gtaggaacttaataccgtgctcttgg 81




>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
          mojavensis
          Length = 96

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 agcgaggtatagagttcctacgt 38
          |||||||||||||||||||||||
Sbjct: 19 agcgaggtatagagttcctacgt 41



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 gtaggaacttcataccgtgctcttgg 75
          |||||||||| |||||||||||||||
Sbjct: 58 gtaggaacttaataccgtgctcttgg 83