miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;BABH01023670.1/7511-7596 7091:Bombyx mori
          (domestic silkworm)
          Length = 86

 Score =  168 bits (85), Expect = 7e-42
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  acgtcaatttctttcgatgagtggaggtttagtgcatgtttatttacaccatgactagat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  acgtcaatttctttcgatgagtggaggtttagtgcatgtttatttacaccatgactagat 61

                                   
Query: 61 ccacactcatccatggaagttgcga 85
          |||||||||||||||||||||||||
Sbjct: 62 ccacactcatccatggaagttgcga 86




>RF00754;mir-279;ABLF01005773.1/5502-5409 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 94

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 catgactagatccacactcatccatg 75
          ||||||||||||||||||||||||||
Sbjct: 59 catgactagatccacactcatccatg 84




>RF00754;mir-279;ABJB010738028.1/1547-1632 6945:Ixodes scapularis
          (black-legged tick)
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 50 catgactagatccacactcatccatggaag 79
          ||||||||||||||||||||||||| ||||
Sbjct: 51 catgactagatccacactcatccatagaag 80




>RF00754;mir-279;AAJJ01000939.1/8868-8954 7070:Tribolium castaneum
          (red flour beetle)
          Length = 87

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                           
Query: 26 ggtttagtgcatgttt-atttacaccatgactagatccacactcatcca 73
          ||||| |||||||||| ||||  | ||||||||||||||||||||||||
Sbjct: 27 ggtttggtgcatgttttattttaatcatgactagatccacactcatcca 75




>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
          (honey bee)
          Length = 93

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgactagatccacactcatccatggaa 78
          |||||||||||||||||||||| ||||
Sbjct: 58 tgactagatccacactcatccaaggaa 84




>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
          (honey bee)
          Length = 90

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgactagatccacactcatccatggaa 78
          |||||||||||||||||||||| ||||
Sbjct: 57 tgactagatccacactcatccaaggaa 83