miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00732;mir-305;BABH01005296.1/11892-11978 7091:Bombyx mori
          (domestic silkworm)
          Length = 87

 Score =  172 bits (87), Expect = 5e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  accgccgcacgcccattgtacttcatcaggtgctctggtgatcatagttccaggcgcttg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  accgccgcacgcccattgtacttcatcaggtgctctggtgatcatagttccaggcgcttg 60

                                     
Query: 63 ttggagtacacttaccgtgtcggcggt 89
          |||||||||||||||||||||||||||
Sbjct: 61 ttggagtacacttaccgtgtcggcggt 87




>RF00732;mir-305;AADG05001619.1/14219-14305 7460:Apis mellifera
          (honey bee)
          Length = 87

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 attgtacttcatcaggtgctctggtga 43
          |||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtga 41




>RF00732;mir-305;AAAB01008980.1/2241127-2241216 180454:Anopheles
          gambiae str. PEST
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 17 attgtacttcatcaggtgctctggtg 42
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>RF00732;mir-305;AAPP01015737.1/35950-36037 7217:Drosophila
          ananassae
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 17 attgtacttcatcaggtgctctggtg 42
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>RF00732;mir-305;AANI01016257.1/59422-59335 7244:Drosophila
          virilis
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 17 attgtacttcatcaggtgctctggtg 42
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>RF00732;mir-305;AAZO01007192.1/28953-29038 121224:Pediculus
          humanus corporis (human body louse)
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 attgtacttcatcaggtgctctggt 41
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>RF00732;mir-305;AAGE02001651.1/105678-105765 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 attgtacttcatcaggtgctctggt 41
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>RF00732;mir-305;AAJJ01000649.1/41392-41476 7070:Tribolium
          castaneum (red flour beetle)
          Length = 85

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 attgtacttcatcaggtgctctggt 41
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>RF00732;mir-305;ABJB010539510.1/4555-4465 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 attgtacttcatcaggtgctctgg 40
          ||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctgg 38