miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 105 bits (53), Expect = 8e-23
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 cgaaagttccatgcttccttgcattcaatagtgatctttgaaa-cgtatggaatgtaaag 60
||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||
Sbjct: 2 cgaaagttccatgcttccttgcattcaatagtgat-tctgaaagcatatggaatgtaaag 60
Query: 61 aagtatggagcgctcgg 77
|||||||||||||||||
Sbjct: 61 aagtatggagcgctcgg 77
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/75 (90%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1 gcgaaagttccatgcttccttgcattcaatagtgatctttg---aaacgtatggaatgta 57
||||||||||||||||||||||||||||||||| || |||| || | |||||||||||
Sbjct: 1 gcgaaagttccatgcttccttgcattcaatagt-atgtttgtaaaaccctatggaatgta 59
Query: 58 aagaagtatggagcg 72
|||||||||||||||
Sbjct: 60 aagaagtatggagcg 74
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/75 (90%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1 gcgaaagttccatgcttccttgcattcaatagtgatctttgaaa---cgtatggaatgta 57
||||||||||||||||||||||||||||||||| || ||| ||| | |||||||||||
Sbjct: 1 gcgaaagttccatgcttccttgcattcaatagt-atgtttcaaaaaccctatggaatgta 59
Query: 58 aagaagtatggagcg 72
|||||||||||||||
Sbjct: 60 aagaagtatggagcg 74
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 6 agttccatgcttccttgcattcaatagtgatctttgaaacgtatggaatgtaaagaagta 65
|||||||||||||||||||||||||||| | | || | |||||||||||||||||||
Sbjct: 6 agttccatgcttccttgcattcaatagtatttatataagcatatggaatgtaaagaagta 65
Query: 66 tggagcg 72
|||||||
Sbjct: 66 tggagcg 72
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 42 aaacgtatggaatgtaaagaagtatggagcg 72
|||||||||||||||||||||||||||||||
Sbjct: 39 aaacgtatggaatgtaaagaagtatggagcg 69
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 44 acgtatggaatgtaaagaagtatggagcg 72
|||||||||||||||||||||||||||||
Sbjct: 65 acgtatggaatgtaaagaagtatggagcg 93
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 acgtatggaatgtaaagaagtatggagc 71
||||||||||||||||||||||||||||
Sbjct: 41 acgtatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 acgtatggaatgtaaagaagtatggagc 71
||||||||||||||||||||||||||||
Sbjct: 41 acgtatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 agttccatgcttccttgcattcaatagt 33
||||||||||||||||||||||||||||
Sbjct: 6 agttccatgcttccttgcattcaatagt 33
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatggagc 71
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatggagc 71
|||||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatggagc 69
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 gtatggaatgtaaagaagtatggag 70
|||||||||||||||||||||||||
Sbjct: 49 gtatggaatgtaaagaagtatggag 73
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 gtatggaatgtaaagaagtatg 67
||||||||||||||||||||||
Sbjct: 45 gtatggaatgtaaagaagtatg 66
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatg 83
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatg 77
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatg 69
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatg 72
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatg 66
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatg 66
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatg 68
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatg 68
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatg 66
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tatggaatgtaaagaagtatg 67
|||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatg 66
