miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAWU01020422.1/10643-10573 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 ccactctcaaagtggctgtgaaatggttcctccagaaatcgccatatcacagccagcttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccactctcaaagtggctgtgaaatggttcctccagaaatcgccatatcacagccagcttt 60
Query: 69 gaagagcgata 79
|||||||||||
Sbjct: 61 gaagagcgata 71
>RF00047;mir-2;AAGE02012793.1/17551-17479 7159:Aedes aegypti
(yellow fever mosquito)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcga 77
|||||||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgaagagcga 71
>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
silkworm)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 gccatatcacagccagctttgaagagcgat 78
|||||||||||||||||||||| |||||||
Sbjct: 39 gccatatcacagccagctttgatgagcgat 68
>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
(yellow fever mosquito)
Length = 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 actctcaaagtggctgtgaaatggtt 36
||||||||||||||||||||||||||
Sbjct: 3 actctcaaagtggctgtgaaatggtt 28
>RF00047;mir-2;AAAB01008807.1/11606832-11606920 180454:Anopheles
gambiae str. PEST
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
||||||||||||||||||||||||||
Sbjct: 61 catatcacagccagctttgaagagcg 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctctcaaagtggctgtgaaatg 33
||||||||||||||||||||||
Sbjct: 4 ctctcaaagtggctgtgaaatg 25
>RF00047;mir-2;ABKP02009549.1/3713-3802 377271:Anopheles gambiae M
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
||||||||||||||||||||||||||
Sbjct: 62 catatcacagccagctttgaagagcg 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctctcaaagtggctgtgaaatg 33
||||||||||||||||||||||
Sbjct: 4 ctctcaaagtggctgtgaaatg 25
>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
gambiae str. PEST
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 ctctcaaagtggctgtgaaatggt 35
||||||||||||||||||||||||
Sbjct: 4 ctctcaaagtggctgtgaaatggt 27
>RF00047;mir-2;AANI01013749.1/162474-162400 7244:Drosophila
virilis
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcga 77
|||||||||||||||||||| ||||||
Sbjct: 47 catatcacagccagctttgaggagcga 73
>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
corporis (human body louse)
Length = 61
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 33 catatcacagccagctttgatgagcg 58
>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
(pea aphid)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 40 catatcacagccagctttgatgagcg 65
>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
(honey bee)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 40 catatcacagccagctttgatgagcg 65
>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
(fruit fly)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 41 catatcacagccagctttgaggagcg 66
>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 37 catatcacagccagctttgatgagcg 62
>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 37 catatcacagccagctttgatgagcg 62
>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
(black-legged tick)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 catatcacagccagctttgaagagcg 76
|||||||||||||||||||| |||||
Sbjct: 40 catatcacagccagctttgatgagcg 65
