miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
          gambiae str. PEST
          Length = 78

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 72/78 (92%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtctgttcacatcttaccgggcagcattagatat-tttttaaatacttctaatactgtca 59
          |||||||||||||||||||||||||||||||||| || |   ||| ||||||||||||||
Sbjct: 1  gtctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtca 60

                            
Query: 60 ggtaaagatgtcgtccga 77
          ||||||||||||||||||
Sbjct: 61 ggtaaagatgtcgtccga 78




>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
          Length = 79

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 71/77 (92%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                      
Query: 2  tctgttcacatcttaccgggcagcattagata--ttttttaaatacttctaatactgtca 59
          |||||||||||||||||||||||||||||||   | |||||||||  |||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtca 61

                           
Query: 60 ggtaaagatgtcgtccg 76
          |||||||||||||||||
Sbjct: 62 ggtaaagatgtcgtccg 78




>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
          corporis (human body louse)
          Length = 78

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcaggt 62
          ||||| ||||||||||||||||||||||||   |||||| || |||||||||||||||||
Sbjct: 3  ctgtttacatcttaccgggcagcattagattgattttaagtaattctaatactgtcaggt 62

                   
Query: 63 aaagatgtc 71
          || ||||||
Sbjct: 63 aatgatgtc 71




>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
          willistoni
          Length = 80

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 69/78 (88%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  tctgttcacatcttaccgggcagcattagatatt---ttttaaatacttctaatactgtc 58
          ||||||||||||||||||||||||||||||| ||    | || |||  ||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgtc 61

                            
Query: 59 aggtaaagatgtcgtccg 76
          ||||||||||||||||||
Sbjct: 62 aggtaaagatgtcgtccg 79




>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
          (red flour beetle)
          Length = 77

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctgttcacatcttaccgggcagcattagat-attttttaaatacttctaatactgtcagg 61
          ||||| |||||||||||||||||||||||| |  |||||  |||||||||||||||||||
Sbjct: 3  ctgttaacatcttaccgggcagcattagattacatttta--tacttctaatactgtcagg 60

                         
Query: 62 taaagatgtcgtccg 76
          |||||||||| ||||
Sbjct: 61 taaagatgtcctccg 75




>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
          bee)
          Length = 75

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 2  tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61
          |||||||||||||||||||||||||||||||     || |   |||||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagattgaagttga--ccttctaatactgtcagg 59

                       
Query: 62 taaagatgtcgtc 74
          |||||||||||||
Sbjct: 60 taaagatgtcgtc 72




>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
          silkworm)
          Length = 77

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
          |||||||||||||||||||||||||||||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtcgtccg 76




>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
          (black-legged tick)
          Length = 75

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 46 ttctaatactgtcaggtaaagatgtc 71
          ||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtc 68




>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 79

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tctaatactgtcaggtaaagatgtc 71
          |||||||||||||||||| ||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtc 72