miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00752;mir-14;AAWU01029067.1/5309-5242 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 68

 Score =  135 bits (68), Expect = 1e-31
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgtgggagcgagattaaggcttgctggtttcacgttcgagtaaagtcagtctttttctct 71
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagattaaggcttgctggtttcacgttcgagtaaagtcagtctttttctct 60

                  
Query: 72 ctcctatt 79
          ||||||||
Sbjct: 61 ctcctatt 68




>RF00752;mir-14;ABKQ02021708.1/8469-8536 377270:Anopheles gambiae
          S
          Length = 68

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 63/69 (91%), Gaps = 4/69 (5%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgtgggagcgagattaaggcttgctggtt-tcacgttcga-gtaaagtcagtctttttct 69
          ||||||||||||||||||||||||||||| |||||||  | ||  |||||||||||||||
Sbjct: 1  tgtgggagcgagattaaggcttgctggttatcacgttaaacgt--agtcagtctttttct 58

                   
Query: 70 ctctcctat 78
          |||||||||
Sbjct: 59 ctctcctat 67




>RF00752;mir-14;AAGE02012112.1/774-706 7159:Aedes aegypti (yellow
          fever mosquito)
          Length = 69

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 12 tgtgggagcgagattaaggcttgctggt 39
          ||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagattaaggcttgctggt 28



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 aagtcagtctttttctctctcctatt 79
          ||||||||||||||||||||||||||
Sbjct: 44 aagtcagtctttttctctctcctatt 69




>RF00752;mir-14;AAPU01010044.1/154796-154858 7230:Drosophila
          mojavensis
          Length = 63

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 agtcagtctttttctctctcctat 78
          ||||||||||||||||||||||||
Sbjct: 39 agtcagtctttttctctctcctat 62