miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 111 bits (56), Expect = 2e-24
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattag-ctaaagagtctttgcttttgttggga 71
||||||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagagagcacaacccggcattaggctaaagagtctttgcctttgttggga 61
Query: 72 gtgtgctctctcttctcctgtcat 95
|||||||||||| ||| |||||||
Sbjct: 62 gtgtgctctctcctcttctgtcat 85
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 atgacagaagagagagagtacaacccg 38
|||||||||||||||||| ||||||||
Sbjct: 1 atgacagaagagagagagcacaacccg 27
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atgacagaagagagagagtacaaccc 37
|||||||||||||||||| |||||||
Sbjct: 1 atgacagaagagagagagcacaaccc 26
