miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ggagcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggagcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtg 62
Query: 61 tgacagcggctattgtaagagaccag 86
||||||||||||||||||||||||||
Sbjct: 63 tgacagcggctattgtaagagaccag 88
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 125 bits (63), Expect = 1e-28
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagactcaa--gactcttgtgcgtgtgac 64
Query: 65 agcggctattgtaagagaccag 86
||||||||||||||||||||||
Sbjct: 65 agcggctattgtaagagaccag 86
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 91.7 bits (46), Expect = 1e-18
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 72
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 72
Query: 73 t 73
|
Sbjct: 73 t 73
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 8 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 67
|||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 10 attgcagctgctgaccactgcacaagattagatt---atgactcttgtgcgtgtgacaac 66
Query: 68 ggctattgt 76
|||||||||
Sbjct: 67 ggctattgt 75
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 65.9 bits (33), Expect = 8e-11
Identities = 59/66 (89%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaa---agactcttgtgcgtgtgacagcgg 69
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagcgg 72
Query: 70 ctattg 75
||||||
Sbjct: 73 ctattg 78
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 8 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 67
|||| |||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 10 attgcagctgctgaccactgcacaagattaga---atgcgactcttgtgcgtgtgacaac 66
Query: 68 ggctatt 74
|||||||
Sbjct: 67 ggctatt 73
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 actcttgtgcgtgtgacagcggctattgt 76
|||||||||||||||||||||||||||||
Sbjct: 51 actcttgtgcgtgtgacagcggctattgt 79
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tcttgtgcgtgtgacagcggctattg 75
||||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67
