miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AANI01017489.1/74722-74633 7244:Drosophila
virilis
Length = 90
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 cattacatcttggcactgggagaattcacagttggttatataatattctgtggttctgcg 60
|||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 7 catttcatcttggcactgggagaattcacagtcgattacataatattctgtggttctgcg 66
Query: 61 ggtgccaaactgtaa 75
||||||||| |||||
Sbjct: 67 ggtgccaaaatgtaa 81
>RF00706;mir-263;AAPP01019315.1/707685-707774 7217:Drosophila
ananassae
Length = 90
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 7 atcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcc 66
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 14 atcttggcactgggagaattcacagttgattttat--tattctgtggttctgcgggtgcc 71
Query: 67 aaa 69
|||
Sbjct: 72 aaa 74
>RF00706;mir-263;AAPQ01006581.1/272485-272396 7220:Drosophila
erecta
Length = 90
Score = 85.7 bits (43), Expect = 7e-17
Identities = 58/62 (93%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 8 tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67
||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgattttat--tattctgtggttctgcgggtgcca 72
Query: 68 aa 69
||
Sbjct: 73 aa 74
>RF00706;mir-263;AAFS01001003.1/35414-35505 46245:Drosophila
pseudoobscura pseudoobscura
Length = 92
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 8 tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
Query: 68 aa 69
||
Sbjct: 75 aa 76
>RF00706;mir-263;AAQB01006546.1/140884-140979 7260:Drosophila
willistoni
Length = 96
Score = 73.8 bits (37), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 6 catcttggcactgggagaattcacagttg---gttatataatattctgtggttctgcggg 62
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 13 catcttggcactgggagaattcacagttgattcttattcgatattctgtggttctgcggg 72
Query: 63 tgccaaa 69
|||||||
Sbjct: 73 tgccaaa 79
>RF00706;mir-263;AAKO01000155.1/113509-113420 7238:Drosophila
sechellia
Length = 90
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 8 tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgacttgat--tattctgtggttctgcgggtgcca 72
Query: 68 aa 69
||
Sbjct: 73 aa 74
>RF00706;mir-263;ABKP02026803.1/39465-39371 377271:Anopheles
gambiae M
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 cttggcactgggagaattcacagt 32
||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39
>RF00706;mir-263;AADK01025663.1/3361-3450 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 cttggcactgggagaattcacag 31
|||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacag 38
>RF00706;mir-263;AAGE02001908.1/33266-33358 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 cttggcactgggagaattcacag 31
|||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacag 38
>RF00706;mir-263;ABLF01012668.1/9002-8913 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 atcttggcactgggagaattcacag 31
||||||||||||| |||||||||||
Sbjct: 14 atcttggcactggaagaattcacag 38
