miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00757;mir-275;AANI01016257.1/59564-59470 7244:Drosophila
virilis
Length = 95
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 5 tttaccgcgcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacc 64
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9 tttaccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacc 68
Query: 65 tgaagtagcgcgcgtggtggccagacg 91
|||||||||||||||||||||||||||
Sbjct: 69 tgaagtagcgcgcgtggtggccagacg 95
>RF00757;mir-275;AAPP01015737.1/35785-35873 7217:Drosophila
ananassae
Length = 89
Score = 89.7 bits (45), Expect = 6e-18
Identities = 66/73 (90%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 17 gcgcgctaatcagtgaccggggctggtttt-----tgcaacagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 72 cgcgcgtggtggc 84
>RF00757;mir-275;AAKO01000986.1/85073-85163 7238:Drosophila
sechellia
Length = 91
Score = 85.7 bits (43), Expect = 9e-17
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 17 gcgcgctaatcagtgaccggggcttgttttttatat---acagtcaggtacctgaagtag 73
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 74 cgcgcgtggtggc 86
>RF00757;mir-275;AAFS01000035.1/187021-187111 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 65.9 bits (33), Expect = 8e-11
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
||||||||||||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct: 17 gcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctgaagtag 73
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 74 cgcgcgtggtg 84
>RF00757;mir-275;AAQB01006829.1/458431-458336 7260:Drosophila
willistoni
Length = 96
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
|||||||||||||||||||||||||||||||
Sbjct: 58 acagtcaggtacctgaagtagcgcgcgtggt 88
>RF00757;mir-275;AAWU01017837.1/19596-19687 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 55 cagtcaggtacctgaagtagcgcgcgtg 82
>RF00757;mir-275;AAGE02001651.1/96625-96717 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 55 cagtcaggtacctgaagtagcgcgcgtg 82
>RF00757;mir-275;ABKQ02010004.1/3068-3162 377270:Anopheles gambiae
S
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgt 79
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>RF00757;mir-275;AADG05001619.1/13993-14083 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcg 78
||||||||||||||||||||||||||
Sbjct: 56 cagtcaggtacctgaagtagcgcgcg 81
>RF00757;mir-275;BABH01005296.1/11764-11850 7091:Bombyx mori
(domestic silkworm)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 51 agtcaggtacctgaagtagcgcgcg 75
>RF00757;mir-275;AAZX01002044.1/14734-14647 7425:Nasonia
vitripennis (jewel wasp)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 53 agtcaggtacctgaagtagcgcgcg 77
>RF00757;mir-275;AAJJ01000649.1/41251-41341 7070:Tribolium
castaneum (red flour beetle)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcg 78
>RF00757;mir-275;ABJB010317264.1/3436-3346 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcg 78
>RF00757;mir-275;ABLF01003185.1/42778-42870 7029:Acyrthosiphon
pisum (pea aphid)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcg 76
|||||||||||||||||||||||
Sbjct: 57 agtcaggtacctgaagtagcgcg 79
