miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00729;mir-278;AANI01014820.1/6361-6262 7244:Drosophila virilis
Length = 100
Score = 155 bits (78), Expect = 1e-37
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 63
Query: 63 gggactttcgtccgtttgtaacgccatttg 92
||||||||||||||||||||||||||||||
Sbjct: 64 gggactttcgtccgtttgtaacgccatttg 93
>RF00729;mir-278;AAPP01018781.1/36806-36709 7217:Drosophila
ananassae
Length = 98
Score = 109 bits (55), Expect = 6e-24
Identities = 82/90 (91%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62
|||||||||||||||||||||| ||||||||||||||||| | || ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tccttcgaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccatttg 92
||||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccatttg 91
>RF00729;mir-278;AAGE02001172.1/33036-33136 7159:Aedes aegypti
(yellow fever mosquito)
Length = 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 tggtcggtgggactttcgtccgtttgtaac 84
||||||||||||||||||||||||||||||
Sbjct: 57 tggtcggtgggactttcgtccgtttgtaac 86
>RF00729;mir-278;AAWU01001740.1/43930-44034 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttgtaac 84
|||||||||||||||||||||||||||||
Sbjct: 62 ggtcggtgggactttcgtccgtttgtaac 90
>RF00729;mir-278;ABKP02019144.1/2398-2299 377271:Anopheles gambiae
M
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttgtaacgcca 88
|||||||||||||||||||||||||||| ||||
Sbjct: 57 ggtcggtgggactttcgtccgtttgtaaggcca 89
>RF00729;mir-278;AADG05005760.1/28066-27969 7460:Apis mellifera
(honey bee)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttg 80
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>RF00729;mir-278;AAZO01005350.1/16349-16259 121224:Pediculus
humanus corporis (human body louse)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tcggtgggactttcgtccgttt 79
||||||||||||||||||||||
Sbjct: 52 tcggtgggactttcgtccgttt 73
