miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 145 ataggcaagtcatccttggctagaaaac-tagctcttcatct 185
|||||||||||||||||||||| |||| |||||||||||||
Sbjct: 111 ataggcaagtcatccttggctatcaaacatagctcttcatct 152
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 142 gatataggcaagtcatccttggcta 166
|||||||||||||||||||||||||
Sbjct: 83 gatataggcaagtcatccttggcta 107
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 142 gatataggcaagtcatccttggcta 166
|||||||||||||||||||||||||
Sbjct: 85 gatataggcaagtcatccttggcta 109
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 142 gatataggcaagtcatccttggcta 166
|||||||||||||||||||||||||
Sbjct: 33 gatataggcaagtcatccttggcta 9
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 142 gatataggcaagtcatccttggcta 166
|||||||||||||||||||||||||
Sbjct: 33 gatataggcaagtcatccttggcta 9
>RF00865;MIR169_5;AARH01003347.1/64815-64952 3694:Populus
trichocarpa
Length = 138
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 149 gcaagtcatccttggctagaaaac 172
||||||||||||||||||||||||
Sbjct: 102 gcaagtcatccttggctagaaaac 125
>RF00645;MIR169_2;AARH01003347.1/64945-64821 3694:Populus
trichocarpa
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 149 gcaagtcatccttggctagaaaac 172
||||||||||||||||||||||||
Sbjct: 30 gcaagtcatccttggctagaaaac 7
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 100 ataggcaagtcatccttggcta 121
>RF00865;MIR169_5;CAAP02000122.1/24661-24522 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 137 tggttgatataggcaagtcatccttggcta 166
|||| ||| |||||||||||||||||||||
Sbjct: 92 tggtggatttaggcaagtcatccttggcta 121
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 86 ataggcaagtcatccttggcta 107
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 104 ataggcaagtcatccttggcta 125
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 37 ataggcaagtcatccttggcta 16
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 34 ataggcaagtcatccttggcta 13
>RF00645;MIR169_2;CAAP02000122.1/24529-24655 29760:Vitis vinifera
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 tggttgatataggcaagtcatccttggcta 166
|||| ||| |||||||||||||||||||||
Sbjct: 42 tggtggatttaggcaagtcatccttggcta 13
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ataggcaagtcatccttggcta 166
||||||||||||||||||||||
Sbjct: 35 ataggcaagtcatccttggcta 14
