miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00801;mir-280;AAPP01018712.1/27830-27743 7217:Drosophila
          ananassae
          Length = 88

 Score =  153 bits (77), Expect = 5e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60

                           
Query: 61 atgcaggtatatgcaag 77
          |||||||||||||||||
Sbjct: 61 atgcaggtatatgcaag 77




>RF00801;mir-280;AAQB01006287.1/166688-166782 7260:Drosophila
          willistoni
          Length = 95

 Score =  143 bits (72), Expect = 5e-34
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60

                          
Query: 61 atgcaggtatatgcaa 76
          |||||||||| |||||
Sbjct: 61 atgcaggtatgtgcaa 76




>RF00801;mir-280;AAPT01021476.1/37912-38002 7222:Drosophila
          grimshawi
          Length = 91

 Score =  141 bits (71), Expect = 2e-33
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60

                     
Query: 61 atgcaggtata 71
          |||||||||||
Sbjct: 61 atgcaggtata 71




>RF00801;mir-280;AANI01014841.1/76079-76175 7244:Drosophila
          virilis
          Length = 97

 Score =  141 bits (71), Expect = 2e-33
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttat 60

                     
Query: 61 atgcaggtata 71
          |||||||||||
Sbjct: 61 atgcaggtata 71




>RF00801;mir-280;AAPU01010189.1/60454-60360 7230:Drosophila
          mojavensis
          Length = 95

 Score =  137 bits (69), Expect = 3e-32
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttatat 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  gcttttatgtatttacgttgcatatgaaatgatatttatagtaaacagattattttatat 62

                   
Query: 63 gcaggtata 71
          |||||||||
Sbjct: 63 gcaggtata 71