miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00854;mir-5;AASS01023484.1/3619-3686 7240:Drosophila simulans
          Length = 68

 Score = 93.7 bits (47), Expect = 2e-19
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
          ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 3  taaaaggaacgatcgttgtgatatgagttgttccc-aacatatcacagtgattttccttt 61

             
Query: 61 ata 63
          |||
Sbjct: 62 ata 64




>RF00854;mir-5;AANI01014795.1/39532-39603 7244:Drosophila virilis
          Length = 72

 Score = 77.8 bits (39), Expect = 1e-14
 Identities = 61/66 (92%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  taaaaggaacgatcgttgtgatatgcgtt-att--ccctaacatatcacagtgattttcc 57
          ||||||||||||||||||||||||||||| |||  || | ||||||||||||||||||||
Sbjct: 3  taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 62

                
Query: 58 tttata 63
          ||||||
Sbjct: 63 tttata 68