miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AAGH01003023.1/9218-9292 7240:Drosophila simulans
          Length = 75

 Score =  115 bits (58), Expect = 8e-26
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  taaccgcagggaacctctgctgctgatatattattgagaaacttctatatcacagtggct 60
          ||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1  taaccccagggaacttctgctgctgatatattattgaaaaactcctatatcacagtggct 60

                        
Query: 61 gttctttttggttg 74
          ||||||||||||||
Sbjct: 61 gttctttttggttg 74




>RF00143;mir-6;AAIZ01001618.1/40125-40208 7234:Drosophila
          persimilis
          Length = 84

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 43 ttctatatcacagtggctgttctttttggttg 74
          ||||||||||||||||||||||||||||||||
Sbjct: 52 ttctatatcacagtggctgttctttttggttg 83




>RF00143;mir-6;AAQB01006291.1/70967-70870 7260:Drosophila
          willistoni
          Length = 98

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 43 ttctatatcacagtggctgttctttttggtt 73
          |||||||||||||||||||||||||||||||
Sbjct: 66 ttctatatcacagtggctgttctttttggtt 96




>RF00143;mir-6;AAPU01010225.1/182992-182911 7230:Drosophila
          mojavensis
          Length = 82

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 44 tctatatcacagtggctgttctttttggttg 74
          |||||||||||||||||||||||||||||||
Sbjct: 51 tctatatcacagtggctgttctttttggttg 81



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  taaccgcagggaacctctgctgctgatata 30
          ||||||||||||||  ||||||||||||||
Sbjct: 1  taaccgcagggaactgctgctgctgatata 30




>RF00143;mir-6;AAPT01006453.1/3535-3614 7222:Drosophila grimshawi
          Length = 80

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 45 ctatatcacagtggctgttctttttggttg 74
          ||||||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttggttg 79




>RF00143;mir-6;AANI01014795.1/39849-39929 7244:Drosophila virilis
          Length = 81

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 47 atatcacagtggctgttctttttggttg 74
          ||||||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttggttg 80



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  taaccgcagggaacctctgctgctgatata 30
          ||||||||||||||  ||||||||||||||
Sbjct: 1  taaccgcagggaactgctgctgctgatata 30




>RF00143;mir-6;AAPP01018770.1/57233-57304 7217:Drosophila
          ananassae
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 44 tctatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||||
Sbjct: 41 tctatatcacagtggctgttctttttg 67




>RF00143;mir-6;AASV01054526.1/876-807 7240:Drosophila simulans
          Length = 70

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 47/51 (92%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                             
Query: 18 tgctgctgatatattattgagaaacttctatatcacagtggctgttctttt 68
          ||||||||||||||||| || ||||| | ||||||||||||||||||||||
Sbjct: 16 tgctgctgatatattat-gaaaaactcc-atatcacagtggctgttctttt 64




>RF00143;mir-6;AAPP01018770.1/57378-57462 7217:Drosophila
          ananassae
          Length = 85

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 45 ctatatcacagtggctgttctttttgg 71
          |||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttgg 81




>RF00143;mir-6;AAST01030396.1/2399-2475 7240:Drosophila simulans
          Length = 77

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 44 tctatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||||
Sbjct: 46 tctatatcacagtggctgttctttttg 72




>RF00143;mir-6;AAPT01006453.1/3396-3470 7222:Drosophila grimshawi
          Length = 75

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 44 tctatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||||
Sbjct: 44 tctatatcacagtggctgttctttttg 70




>RF00143;mir-6;AANI01014795.1/39694-39769 7244:Drosophila virilis
          Length = 76

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 44 tctatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||||
Sbjct: 45 tctatatcacagtggctgttctttttg 71




>RF00143;mir-6;AADE01001895.1/3626-3699 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 74

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttctttttg 69




>RF00143;mir-6;AAPU01010225.1/183158-183087 7230:Drosophila
          mojavensis
          Length = 72

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67




>RF00143;mir-6;AAQB01006291.1/70803-70723 7260:Drosophila
          willistoni
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 52 tatatcacagtggctgttcttttt 75




>RF00143;mir-6;AAEU02000463.1/591532-591454 7245:Drosophila yakuba
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>RF00143;mir-6;AAQB01006291.1/71126-71052 7260:Drosophila
          willistoni
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 atatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||
Sbjct: 47 atatcacagtggctgttctttttg 70




>RF00143;mir-6;AAPP01018770.1/57538-57612 7217:Drosophila
          ananassae
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>RF00143;mir-6;AAIZ01001618.1/40271-40349 7234:Drosophila
          persimilis
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>RF00143;mir-6;AAPT01020768.1/61474-61396 7222:Drosophila
          grimshawi
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>RF00143;mir-6;AAPU01010225.1/182811-182733 7230:Drosophila
          mojavensis
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>RF00143;mir-6;AANI01014795.1/40023-40100 7244:Drosophila virilis
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 49 tatatcacagtggctgttcttttt 72