miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
          Length = 79

 Score =  105 bits (53), Expect = 9e-23
 Identities = 74/79 (93%), Gaps = 4/79 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaatactgtc 62
          |||||||||||||||||||||||||||||||| ||| |||   |||||||||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60

                             
Query: 63 aggtaaagatgtcgtccgt 81
          |||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79




>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
          (red flour beetle)
          Length = 77

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagatc-ctttttataactctaatactgtcaggta 67
          ||||| ||||||||||||||||||||||||  | |||||||  |||||||||||||||||
Sbjct: 3  ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 62

                       
Query: 68 aagatgtcgtccg 80
          |||||||| ||||
Sbjct: 63 aagatgtcctccg 75




>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
          willistoni
          Length = 80

 Score = 79.8 bits (40), Expect = 5e-15
 Identities = 70/80 (87%), Gaps = 5/80 (6%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattaga-----tcctttttataactctaatactgt 61
          |||||||||||||||||||||||||||||||     | || |  ||| ||||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60

                              
Query: 62 caggtaaagatgtcgtccgt 81
          ||||||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtccgt 80




>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
          gambiae str. PEST
          Length = 78

 Score = 75.8 bits (38), Expect = 8e-14
 Identities = 67/76 (88%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagatccttttt---ataactctaatactgtcag 64
          |||||||||||||||||||||||||||||||   || |   |||  ||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 61

                          
Query: 65 gtaaagatgtcgtccg 80
          ||||||||||||||||
Sbjct: 62 gtaaagatgtcgtccg 77




>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
          silkworm)
          Length = 77

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 65/72 (90%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gttcacatcttaccgggcagcattaga-tcctttttataact-ctaatactgtcaggtaa 68
          |||| |||||||||||||||||||||| |||| | ||||  | |||||||||||||||||
Sbjct: 5  gttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaa 64

                      
Query: 69 agatgtcgtccg 80
          ||||||||||||
Sbjct: 65 agatgtcgtccg 76




>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
          corporis (human body louse)
          Length = 78

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 61/69 (88%), Gaps = 2/69 (2%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagatccttttta--taactctaatactgtcaggt 66
          ||||| ||||||||||||||||||||||||   |||||  ||| ||||||||||||||||
Sbjct: 3  ctgtttacatcttaccgggcagcattagattgattttaagtaattctaatactgtcaggt 62

                   
Query: 67 aaagatgtc 75
          || ||||||
Sbjct: 63 aatgatgtc 71




>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
          bee)
          Length = 75

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 7  atctgttcacatcttaccgggcagcattagat 38
          ||||||||||||||||||||||||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagat 32




>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
          (black-legged tick)
          Length = 75

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||||||||||
Sbjct: 44 tctaatactgtcaggtaaagatgtc 68