miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AAZX01003786.1/19988-19908 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 81

 Score =  153 bits (77), Expect = 5e-37
 Identities = 80/81 (98%)
 Strand = Plus / Plus

                                                                      
Query: 4  cataaaagataggtcgagattggtggcaatgtttcgtaatggttttccctcaatattgca 63
          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cataaaagataggtcgagatcggtggcaatgtttcgtaatggttttccctcaatattgca 60

                               
Query: 64 cttgtcccggcctatcggaat 84
          |||||||||||||||||||||
Sbjct: 61 cttgtcccggcctatcggaat 81




>RF00464;mir-92;AADG05005316.1/2307-2226 7460:Apis mellifera
          (honey bee)
          Length = 82

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  cataaaagataggtcgagattggtggcaatgtttcgtaatggttttccct-caatattgc 62
          |||| |||||||| ||||||| ||| ||||||||||| ||| | |   || |||||||||
Sbjct: 1  catagaagataggccgagatttgtgacaatgtttcgtgatgatgtaatcttcaatattgc 60

                                
Query: 63 acttgtcccggcctatcggaat 84
          ||||||||||||||||||||||
Sbjct: 61 acttgtcccggcctatcggaat 82




>RF00464;mir-92;AAVX01075480.1/600-523 7868:Callorhinchus milii
          (ghost shark)
          Length = 78

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 52 ctcaatattgcacttgtcccggcctat 78
          |||||||||||||||||||||||||||
Sbjct: 43 ctcaatattgcacttgtcccggcctat 69




>RF00464;mir-92;AAGJ02142502.1/22630-22713 7668:Strongylocentrotus
          purpuratus
          Length = 84

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 tcaatattgcacttgtcccggccta 77
          |||||||||||||||||||||||||
Sbjct: 50 tcaatattgcacttgtcccggccta 74




>RF00464;mir-92;AAZO01005488.1/5199-5120 121224:Pediculus humanus
          corporis (human body louse)
          Length = 80

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 aatattgcacttgtcccggcctatc 79
          |||||||||||||||||||||||||
Sbjct: 48 aatattgcacttgtcccggcctatc 72




>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 aatattgcacttgtcccggcctat 78
          ||||||||||||||||||||||||
Sbjct: 48 aatattgcacttgtcccggcctat 71




>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 aatattgcacttgtcccggcctat 78
          ||||||||||||||||||||||||
Sbjct: 49 aatattgcacttgtcccggcctat 72




>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
          gambiae str. PEST
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 aatattgcacttgtcccggcctat 78
          ||||||||||||||||||||||||
Sbjct: 45 aatattgcacttgtcccggcctat 68




>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
          purpuratus
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 aatattgcacttgtcccggcct 76
          ||||||||||||||||||||||
Sbjct: 55 aatattgcacttgtcccggcct 76




>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
          (cape rock hyrax)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tattgcacttgtcccggcctat 78
          ||||||||||||||||||||||
Sbjct: 52 tattgcacttgtcccggcctat 73




>RF00464;mir-92;ABEP02031048.1/3570-3494 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 aatattgcacttgtcccggcct 76
          ||||||||||||||||||||||
Sbjct: 45 aatattgcacttgtcccggcct 66