miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 tggaccccagtgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 60
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggaccctaatgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 61
Query: 61 gacagcggctatggtggggcttcca 85
||||||||||||| ||||| |||||
Sbjct: 62 gacagcggctatgatggggtttcca 86
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 107 bits (54), Expect = 2e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 91.7 bits (46), Expect = 1e-18
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 14 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 71
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 74
Query: 72 t 72
|
Sbjct: 75 t 75
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 12 tgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacggct 70
Query: 71 atggtggg 78
|| |||||
Sbjct: 71 attgtggg 78
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 75.8 bits (38), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 12 gcagctgctggccactgcacaagattagaca---taagactcttgtgcgtgtgacagcgg 68
|||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 72
Query: 69 ctat 72
||||
Sbjct: 73 ctat 76
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 75.8 bits (38), Expect = 8e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 12 tgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacggct 70
Query: 71 at 72
||
Sbjct: 71 at 72
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 65.9 bits (33), Expect = 8e-11
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 12 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 71
Query: 68 gctatggtggg 78
||||| |||||
Sbjct: 72 gctattgtggg 82
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 tcttgtgcgtgtgacagcggctat 72
||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctat 65
