miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAZX01013101.1/18917-18986 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 70

 Score =  139 bits (70), Expect = 7e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 tcgctcacaaagtggctgttgtatgtcggatttctttggctcatatcacagccagctttg 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcgctcacaaagtggctgttgtatgtcggatttctttggctcatatcacagccagctttg 60

                    
Query: 73 ttgagcggtg 82
          ||||||||||
Sbjct: 61 ttgagcggtg 70




>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 53 tcatatcacagccagctttgttgagcggtg 82
          |||||||||||||||||||| |||||||||
Sbjct: 39 tcatatcacagccagctttgatgagcggtg 68




>RF00047;mir-2;BABH01007323.1/5662-5596 7091:Bombyx mori (domestic
          silkworm)
          Length = 67

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 tcatatcacagccagctttgttgag 77
          |||||||||||||||||||||||||
Sbjct: 38 tcatatcacagccagctttgttgag 62




>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 51 gctcatatcacagccagctttgttgagcg 79
          |||||||||||||||||||||| ||||||
Sbjct: 34 gctcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
          corporis (human body louse)
          Length = 61

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 53 tcatatcacagccagctttgttgagcgg 80
          |||||||||||||||||||| |||||||
Sbjct: 32 tcatatcacagccagctttgatgagcgg 59




>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
          silkworm)
          Length = 69

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 13 tcgctcacaaagtggctgttgtatgtcggattt-ctttggctcatatcacagccagcttt 71
          ||||||||||||||| ||| ||||| ||  ||| ||||||| ||||||||||||||||||
Sbjct: 1  tcgctcacaaagtggttgtcgtatg-cgtttttactttggc-catatcacagccagcttt 58

                  
Query: 72 gttgagcg 79
          | ||||||
Sbjct: 59 gatgagcg 66




>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 67

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 51 gctcatatcacagccagctttgttgagc 78
          |||||||||||||||||||||| |||||
Sbjct: 36 gctcatatcacagccagctttgatgagc 63




>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 68

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 53 tcatatcacagccagctttgttgagcg 79
          |||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
          (honey bee)
          Length = 68

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 53 tcatatcacagccagctttgttgagcg 79
          |||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
          gambiae str. PEST
          Length = 76

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 ctcatatcacagccagctttgttgagc 78
          ||||||||||||||||||||| |||||
Sbjct: 46 ctcatatcacagccagctttgatgagc 72




>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 53 tcatatcacagccagctttgttgagcg 79
          |||||||||||||||||||| ||||||
Sbjct: 36 tcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
          briggsae
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggctcatatcacagccagctttg 72
          ||||| ||||||||||||||||||||
Sbjct: 55 tttggttcatatcacagccagctttg 80




>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
          (California sea hare)
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 53 tcatatcacagccagctttgttgagc 78
          |||||||||||||||||||| |||||
Sbjct: 37 tcatatcacagccagctttgatgagc 62