miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 95.6 bits (48), Expect = 9e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 8 ctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcaggta 67
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 62
Query: 68 aagatgtc 75
||||||||
Sbjct: 63 aagatgtc 70
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||||| | ||| | ||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattgaagttg-accttctaatactgtcagg 59
Query: 66 taaagatgtcgtcagg 81
||||||||||||||||
Sbjct: 60 taaagatgtcgtcagg 75
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 ctgtttacatcttaccgggcagcattagattacatttgaatt--ttctaatactgtcagg 65
||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagatt-gattttaagtaattctaatactgtcagg 61
Query: 66 taaagatgtcgtcagg 81
||| |||||| |||||
Sbjct: 62 taatgatgtcctcagg 77
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 65.9 bits (33), Expect = 8e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagattacatttga-attttctaatactgtcaggtaaagatg 73
|||||||||||||||||||||| | | | | |||||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaaagatg 69
Query: 74 tcgtc 78
|||||
Sbjct: 70 tcgtc 74
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattac--atttgaat-tttctaatactgtc 62
||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60
Query: 63 aggtaaagatgtcgtc 78
||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtc 76
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/77 (85%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagat----tacatttgaattttctaatactgt 61
||||||| |||||||||||||||||||||||| ||| | || | |||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60
Query: 62 caggtaaagatgtcgtc 78
|||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtc 77
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 7 tctgtttacatcttaccgggcagcattagattacattt--gaattttctaatactgtcag 64
|||||| |||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 61
Query: 65 gtaaagatgtcgtc 78
||||||||||||||
Sbjct: 62 gtaaagatgtcgtc 75
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||||
Sbjct: 42 tttctaatactgtcaggtaaagatgtc 68
>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtcgtcag 80
|||||||||||||||||| |||||| ||||
Sbjct: 48 tctaatactgtcaggtaatgatgtcctcag 77
