miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 60
Query: 65 atgtgtgctcactctctatctgtcac 90
||||||||||||||||||||||||||
Sbjct: 61 atgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 85.7 bits (43), Expect = 9e-17
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 64
|||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcctgcatga--attcatgctcgaagcc 58
Query: 65 atgtgtgctcactctctatctgtcac 90
|| ||||| ||||||||||||||||
Sbjct: 59 ttgcgtgcttactctctatctgtcac 84
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 75.8 bits (38), Expect = 9e-14
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgttt--cattctcgaag 62
|||||||||||||||||||||||||||| |||| | ||||||||| ||| || |||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgttttctagcatgatgttttacatgcttgaaa 60
Query: 63 ctatgtgtgctcact-ctctatctgtcac 90
||||||||||||||| |||||||||||||
Sbjct: 61 ctatgtgtgctcactgctctatctgtcac 89
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/86 (86%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 64
|||||||||||||||||||||||||||| ||||| || | ||||||| || |||| |
Sbjct: 1 gtgacagaagagagtgagcacacatggtgctttcttgca----gtttcatgcttgaagtt 56
Query: 65 atgtgtgctcactctctatctgtcac 90
|| ||||||||| |||||||||||||
Sbjct: 57 atatgtgctcaccctctatctgtcac 82
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgttt-cattctcgaagc 63
|||||||||||||||||||||| ||||| |||| | ||||||||| ||| || |||||
Sbjct: 1 gtgacagaagagagtgagcacatatggtcttttcaagcatgatgtttacatgcttgaagc 60
Query: 64 tatgtgtgctcac-tctctatctgtcac 90
|||| |||||||| ||||||||||||||
Sbjct: 61 tatgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 64
|||||||||||||||||||||||| ||||||||| || |||| | ||| || ||| ||
Sbjct: 1 gtgacagaagagagtgagcacacagggtactttcttgcatga-catccatgcttgaaact 59
Query: 65 atgtgtgctcactctctatctgtcac 90
|| ||||||||||||||||||||||
Sbjct: 60 ttgcgtgctcactctctatctgtcac 85
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggta-ctttcgtgtatgat-----gtttcattctc 58
|||||||||||||||||||||||||||| ||||| || || | ||||||| ||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 59 gaagctatgtgtgctcactctctatctgtcac 90
|||||||||||||||||||||||||| |||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtcac 92
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 64
|||||||||||||||||||||||||||| ||| || ||| | | ||| || ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtctgttcttgcatg--ggtccatgcttgaagct 58
Query: 65 atgtgtgctcactctctatctgtca 89
|| |||||||||||||||||||||
Sbjct: 59 ctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt 32
||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 48 gtttcattctcgaagctatgtgtgctcactctctatctgtcac 90
||||||| || ||||||||||||||| ||||||| ||||||||
Sbjct: 56 gtttcatgcttgaagctatgtgtgcttactctctctctgtcac 98
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt 32
||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggtacttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttt 33
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgttt 51
|||| ||||||||||||||||||||||| |||| || |||||||||
Sbjct: 1 gtgatagaagagagtgagcacacatggtgttttcttgcatgatgttt 47
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ctatgtgtgctcactctctatctgtcac 90
||||||||||| ||||||||||||||||
Sbjct: 68 ctatgtgtgcttactctctatctgtcac 95
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gacagaagagagtgagcacacatgg 31
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggtactttc 38
||||||||||||||||||||||| ||| |||||
Sbjct: 2 tgacagaagagagtgagcacacacggtgctttc 34
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt 32
||||||||||||||||||||||| ||||
Sbjct: 1 gtgacagaagagagtgagcacacgtggt 28
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatgg 31
|||||||||||||||||||| |||||
Sbjct: 2 tgacagaagagagtgagcacccatgg 27
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
