miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
          Length = 82

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 77/89 (86%), Gaps = 7/89 (7%)
 Strand = Plus / Plus

                                                                      
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgcacgattatgtttcctgcttgaa 64
          ||||||||||||||||||||||||||||| |||||||||       ||||| ||||||||
Sbjct: 1  gtgacagaagagagtgagcacacatggtgctttcttgca-------gtttcatgcttgaa 53

                                       
Query: 65 gctatatgtgcttactctctatctgtcac 93
          | |||||||||| || |||||||||||||
Sbjct: 54 gttatatgtgctcaccctctatctgtcac 82




>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
          (thale cress)
          Length = 98

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 82/98 (83%), Gaps = 9/98 (9%)
 Strand = Plus / Plus

                                                                      
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgcacgattat---------gtttc 55
          ||||||||||||||||||||||||||||| ||||||||| | || |         |||||
Sbjct: 1  gtgacagaagagagtgagcacacatggtggtttcttgcatgcttttttgattagggtttc 60

                                                
Query: 56 ctgcttgaagctatatgtgcttactctctatctgtcac 93
           ||||||||||||| |||||||||||||| ||||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtcac 98




>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
          Length = 89

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 79/90 (87%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgcacgattatgtttcctgcttgaa 64
          ||||||||||||||||||||||||||||||||||| ||| || | | || | ||||||||
Sbjct: 1  gtgacagaagagagtgagcacacatggtgttttctagcatga-tgttttacatgcttgaa 59

                                        
Query: 65 gctatatgtgcttact-ctctatctgtcac 93
           |||| |||||| ||| |||||||||||||
Sbjct: 60 actatgtgtgctcactgctctatctgtcac 89




>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
          (thale cress)
          Length = 92

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 80/92 (86%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 5  gtgacagaagagagtgagcacacatggt-gttttcttgcacgatt--atgtttcctgctt 61
          |||||||||||||||||||||||||||| | |||||||||   ||  | ||||| |||||
Sbjct: 1  gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60

                                          
Query: 62 gaagctatatgtgcttactctctatctgtcac 93
          |||||||| |||||| |||||||||| |||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtcac 92




>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgcacgattatgtttcctgcttgaa 64
          ||||||||||||||||||||||||||||  |||| ||    || ||||||| | || |||
Sbjct: 1  gtgacagaagagagtgagcacacatggtactttcgtg---tatgatgtttcattctcgaa 57

                                       
Query: 65 gctatatgtgcttactctctatctgtcac 93
          ||||| |||||| ||||||||||||||||
Sbjct: 58 gctatgtgtgctcactctctatctgtcac 86




>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
          Length = 95

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgca 43
          |||| ||||||||||||||||||||||||||||||||||
Sbjct: 1  gtgatagaagagagtgagcacacatggtgttttcttgca 39




>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
          Length = 84

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgca 43
          |||||||||||||||||||||||||||| | ||||||||
Sbjct: 1  gtgacagaagagagtgagcacacatggtctgttcttgca 39




>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
          grass)
          Length = 103

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 38/39 (97%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                 
Query: 6  tgacagaagagagtgagcacacatggtg-ttttcttgca 43
          |||||||||||||||||||||||||||| ||||||||||
Sbjct: 2  tgacagaagagagtgagcacacatggtgcttttcttgca 40




>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
          (castor bean)
          Length = 84

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  gtgacagaagagagtgagcacacatggt 32
          ||||||||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacatggt 28




>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
          (castor bean)
          Length = 87

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  gtgacagaagagagtgagcacacatggt 32
          ||||||||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacatggt 28




>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
          Length = 93

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 6  tgacagaagagagtgagcacacatggtg 33
          ||||||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacatggtg 29




>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
          trichocarpa
          Length = 85

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 5  gtgacagaagagagtgagcacacatggtgttttcttgca 43
          |||||||||||||||||||||||| |||  |||||||||
Sbjct: 1  gtgacagaagagagtgagcacacagggtactttcttgca 39




>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 6  tgacagaagagagtgagcacacatggtgttttctt 40
          ||||||||||||||||||||||| |||| ||||||
Sbjct: 2  tgacagaagagagtgagcacacacggtggtttctt 36




>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
          Group
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 6  tgacagaagagagtgagcacacatggtgttttctt 40
          ||||||||||||||||||||||| |||| ||||||
Sbjct: 2  tgacagaagagagtgagcacacacggtgctttctt 36




>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 5  gtgacagaagagagtgagcacacatggtgttttc 38
          |||||||||||||||||||||| ||||| |||||
Sbjct: 1  gtgacagaagagagtgagcacatatggtcttttc 34




>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
          (thale cress)
          Length = 85

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 7  gacagaagagagtgagcacacatgg 31
          |||||||||||||||||||||||||
Sbjct: 3  gacagaagagagtgagcacacatgg 27




>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 6  tgacagaagagagtgagcacacatggtgtttt 37
          |||||||||||||||||||| ||||| |||||
Sbjct: 2  tgacagaagagagtgagcacccatggcgtttt 33




>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
          Japonica Group
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  gtgacagaagagagtgagcacacatggt 32
          ||||||||||||||||||||||| ||||
Sbjct: 1  gtgacagaagagagtgagcacacgtggt 28




>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
          (thale cress)
          Length = 84

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
          trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
          trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
          (castor bean)
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
          (sorghum)
          Length = 91

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  gtgacagaagagagtgagcacac 27
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
          (sorghum)
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  gtgacagaagagagtgagcacac 27
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
          (sorghum)
          Length = 119

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
          Group
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  gtgacagaagagagtgagcacac 27
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
          Japonica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  gtgacagaagagagtgagcacac 27
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
          Indica Group
          Length = 114

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tgacagaagagagtgagcacaca 28
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacaca 24




>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
          Group
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacac 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;ABEU01000369.1/338030-338109
          145481:Physcomitrella patens subsp. patens
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  gtgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcaca 22




>RF00073;mir-156;ABEU01001319.1/101465-101387
          145481:Physcomitrella patens subsp. patens
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  gtgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcaca 22