miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacatagacactcggtatagatgtatatcgttgcctttgcgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacatagacactcggtatagatgtatatcgttgcctttgcgt 60
Query: 65 gctcactcatctttctgtcaa 85
|||||||||||||||||||||
Sbjct: 61 gctcactcatctttctgtcaa 81
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacatagacac-tcggtatagatgtatatcgttgcctttgcg 63
|||||||||||||||||||||| ||| | | ||||| || |||| | |||| ||||||
Sbjct: 1 ttgacagaagagagtgagcacacagaggcatttgtataaatctatacccttgcttttgcg 60
Query: 64 tgctcactcatctttctgtcaa 85
|||||||| ||||||||||||
Sbjct: 61 tgctcacttctctttctgtcaa 82
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacat 27
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacat 23
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacat 27
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacat 23
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacata 28
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacata 24
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacat 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacat 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacat 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacat 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
