miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacatgctgcagtgattgtatgatagcatacaattcttggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacatgctgcagtgattgtatgatagcatacaattcttggtg 60
Query: 65 cgtgctcacttctctttctgtcat 88
||||||||||||||||||||||||
Sbjct: 61 cgtgctcacttctctttctgtcat 84
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacatgctgca-gtgattgtatgatagcatacaattcttggt 63
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||
Sbjct: 1 ttgacagaagagagtgagcacatgttggttgtgattgtatgatagcatataattcttagt 60
Query: 64 gcgtgctcacttctctttctgtcat 88
| ||||||||| |||||||||||||
Sbjct: 61 gtgtgctcactcctctttctgtcat 85
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 ggtgcgtgctcacttctctttctgtca 87
|||||||||||||||||||||||||||
Sbjct: 55 ggtgcgtgctcacttctctttctgtca 81
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgctcacttctctttctgtca 87
|||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgctcacttctctttctgtca 87
|||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgctcacttctctttctgtca 87
|||||||||||||||||||||||||
Sbjct: 92 tgcgtgctcacttctctttctgtca 116
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgctcacttctctttctgtca 87
|||||||||||||||||||||||||
Sbjct: 99 tgcgtgctcacttctctttctgtca 123
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacatgc 29
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacatgc 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 gtgcgtgctcacttctctttctgtca 87
|||||||||||| |||||||||||||
Sbjct: 56 gtgcgtgctcacctctctttctgtca 81
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacatgctgc 32
|||||||||||||||||||||| |||||
Sbjct: 1 ttgacagaagagagtgagcacacgctgc 28
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacatgc 29
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacatgc 25
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ggtgcgtgctcacttctctttctgtca 87
||||||||||||| |||||||||||||
Sbjct: 56 ggtgcgtgctcacctctctttctgtca 82
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 gcgtgctcacttctctttctgtca 87
||||||||||||||||||||||||
Sbjct: 62 gcgtgctcacttctctttctgtca 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ggtgcgtgctcacttctctttctgtca 87
||||||||||||| |||||||||||||
Sbjct: 56 ggtgcgtgctcacctctctttctgtca 82
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcacat 27
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacat 23
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacat 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacat 23
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctgtca 87
||||||||||||||||||||||
Sbjct: 59 gtgctcacttctctttctgtca 80
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctgtca 87
||||||||||||||||||||||
Sbjct: 58 gtgctcacttctctttctgtca 79