miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
          (barrel medic)
          Length = 84

 Score =  167 bits (84), Expect = 3e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ttgacagaagagagtgagcacatgctgcagtgattgtatgatagcatacaattcttggtg 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcacatgctgcagtgattgtatgatagcatacaattcttggtg 60

                                  
Query: 65 cgtgctcacttctctttctgtcat 88
          ||||||||||||||||||||||||
Sbjct: 61 cgtgctcacttctctttctgtcat 84




>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
          clover)
          Length = 85

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 77/85 (90%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  ttgacagaagagagtgagcacatgctgca-gtgattgtatgatagcatacaattcttggt 63
          |||||||||||||||||||||||| ||   ||||||||||||||||||| ||||||| ||
Sbjct: 1  ttgacagaagagagtgagcacatgttggttgtgattgtatgatagcatataattcttagt 60

                                   
Query: 64 gcgtgctcacttctctttctgtcat 88
          | ||||||||| |||||||||||||
Sbjct: 61 gtgtgctcactcctctttctgtcat 85




>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 61 ggtgcgtgctcacttctctttctgtca 87
          |||||||||||||||||||||||||||
Sbjct: 55 ggtgcgtgctcacttctctttctgtca 81




>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 63 tgcgtgctcacttctctttctgtca 87
          |||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
          (castor bean)
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 63 tgcgtgctcacttctctttctgtca 87
          |||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
          Length = 117

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 63  tgcgtgctcacttctctttctgtca 87
           |||||||||||||||||||||||||
Sbjct: 92  tgcgtgctcacttctctttctgtca 116




>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
           (sorghum)
          Length = 124

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 63  tgcgtgctcacttctctttctgtca 87
           |||||||||||||||||||||||||
Sbjct: 99  tgcgtgctcacttctctttctgtca 123




>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
          (thale cress)
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  tgacagaagagagtgagcacatgc 29
          ||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacatgc 25



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 62 gtgcgtgctcacttctctttctgtca 87
          |||||||||||| |||||||||||||
Sbjct: 56 gtgcgtgctcacctctctttctgtca 81




>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  ttgacagaagagagtgagcacatgctgc 32
          |||||||||||||||||||||| |||||
Sbjct: 1  ttgacagaagagagtgagcacacgctgc 28




>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  tgacagaagagagtgagcacatgc 29
          ||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacatgc 25



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 61 ggtgcgtgctcacttctctttctgtca 87
          ||||||||||||| |||||||||||||
Sbjct: 56 ggtgcgtgctcacctctctttctgtca 82




>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 64 gcgtgctcacttctctttctgtca 87
          ||||||||||||||||||||||||
Sbjct: 62 gcgtgctcacttctctttctgtca 85



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 61 ggtgcgtgctcacttctctttctgtca 87
          ||||||||||||| |||||||||||||
Sbjct: 56 ggtgcgtgctcacctctctttctgtca 82




>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
          (barrel medic)
          Length = 81

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  ttgacagaagagagtgagcacat 27
          |||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcacat 23




>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tgacagaagagagtgagcacat 27
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacat 23




>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
          Japonica Group
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 gtgctcacttctctttctgtca 87
          ||||||||||||||||||||||
Sbjct: 59 gtgctcacttctctttctgtca 80




>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
          Group
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  ttgacagaagagagtgagcaca 26
          ||||||||||||||||||||||
Sbjct: 1  ttgacagaagagagtgagcaca 22




>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 gtgctcacttctctttctgtca 87
          ||||||||||||||||||||||
Sbjct: 58 gtgctcacttctctttctgtca 79