miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 149 ttctttggattgaagggagctctacatctt 178
||||||||||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctctacatctt 198
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 142 ttaatctttctttggattgaagggagctctacatcttgctct 183
|||||| || ||||||||||||||||||||||| || |||||
Sbjct: 152 ttaatccttgtttggattgaagggagctctacacctcgctct 193
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 152 tttggattgaagggagctctacatct 177
||||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacatct 187
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 150 tctttggattgaagggagctctacatcttg 179
|||||||||||||||||||||| |||||||
Sbjct: 153 tctttggattgaagggagctctgcatcttg 182
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 149 ttctttggattgaagggagctctacatct 177
||||||||||||||||||||||| |||||
Sbjct: 173 ttctttggattgaagggagctcttcatct 201
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 150 tctttggattgaagggagctctacatctt 178
|||||||||||||||||||||| ||||||
Sbjct: 240 tctttggattgaagggagctctgcatctt 268
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 tttggattgaagggagctctacat 175
||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 145 atctttctttggattgaagggagctct 171
|||||| ||||||||||||||||||||
Sbjct: 139 atctttttttggattgaagggagctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tttggattgaagggagctctaca 174
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 150 tctttggattgaagggagctctacatc 176
|||||||||||||||||||||| ||||
Sbjct: 199 tctttggattgaagggagctctgcatc 225
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 152 tttggattgaagggagctctacatcttgctc 182
|||||| ||||||||||||| ||||||||||
Sbjct: 190 tttggagtgaagggagctctgcatcttgctc 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 150 tctttggattgaagggagctctacatc 176
|||||||||||||||||||||| ||||
Sbjct: 210 tctttggattgaagggagctctgcatc 236
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 ttggattgaagggagctctaca 174
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
