miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
          (barrel medic)
          Length = 87

 Score =  172 bits (87), Expect = 5e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gcttgcctggctccctgaatgccatctgagaagcttgtcaaaacgattggcaacctttcc 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcttgcctggctccctgaatgccatctgagaagcttgtcaaaacgattggcaacctttcc 60

                                     
Query: 63 atttggcatgaagggagccatgcaggc 89
          |||||||||||||||||||||||||||
Sbjct: 61 atttggcatgaagggagccatgcaggc 87




>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 6  tgcctggctccctgaatgccatctgagaagc 36
          ||||||||||||||||||||||| |||||||
Sbjct: 4  tgcctggctccctgaatgccatccgagaagc 34




>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
          (sorghum)
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  tgcctggctccctgaatgccatctgaga 33
          ||||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgaatgccatccgaga 31